Features

Douglas Allen

  • Ma F, Jazmin LJ, Young JD, & Allen DK (2014). Isotopically nontationary 13C flux analysis of changes in Arabidopsis thaliana leaf metabolism due to high light acclimation. Proc Natl Acad Sci USA, 111(47):16967-72.

  • Guo L, Ma F, Wei F, Fanella B, Allen DK, & Wang X (2014). Cytosolic phosphorylating glyceraldehyde-3 phosphate dehydrogenases affect Arabidopsis cellular metabolism and promote seed oil accumulation. Plant Cell, 26(7):3023-35.

  • Allen DK & Young JD (2013). Carbon and Nitrogen Provisions Alter the Metabolic Flux in Developing Soybean Embryos. Plant Physiol, 161(3):1458-75.

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Rebecca Bart

  • Mutka AM & Bart RS (2015). Image-based phenotyping of plant disease symptoms. Front Plant Sci, 5:734. [epub]

  • Cohn M, Bart RS, Shybut M, Dahlbeck D, Gomez M, Morbitzer R, Hou BH, Frommer WB, Lahaye T, Staskawicz BJ (2014). Xanthomonas axonopodis virulence is promoted by a transcription activator-like effector-mediated induction of a SWEET sugar transporter in cassava. Mol Plant Microbe Interac, 27(11):1186-98.

  • Bart R, Cohn M, Kassen A, McCallum EJ, Shybut M, Petriello A, Krasileva K, Dahlbeck D, Medina C, Alicai T, Kumar L, Moreira LM, Rodrigues Neto J, Verdier V, Santana MA, Kositchareonkul N, Vanderschuren H, Gruissem W, Bernal A, & Staskawicz BJ (2013). High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance. Proc Natl Acad Sci USA, 110(49):19969.

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Ivan Baxter

  • Huang P, Feldman M, Schroder S, Bahri BA, Diao X, Zhi H, Estep M, Baxter I, Devos KM & Kellogg EA (2014). Population genetics of Setaria viridis, a new model system. Mol Ecol, 23(20):4912-25.

  • Baxter I, Brazelton JN, Yu D, Huang YS, Lahner B, Yakubova E, Li Y, Bergelson J, Borevitz JO, Nordborg M, Vitek O & Salt DE (2010). A coastal cline in sodium accumulation in Arabidopsis thaliana is driven by natural variation of the sodium transporter AtHKT1;1. PLoS Genet, 6(11):e1001193.

  • Baxter I & Dilkes BP (2012). Elemental profiles reflect plant adaptations to the environment. Science, 336(6089):1661-63.

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Thomas Brutnell

  • Wang L, Czedik-Eysenberg A, Mertz R, Si Y, Tohge T, Nunes-Nesi A, Arrivault S, Dedow L, Bryant D, Zhou W, Xu J, Weissmann S, Studer A, Li P, Zhang C, LaRue T, Shao Y, Ding Z, Sun Q, Patel R, Turgeon R, Zhu X, Provart N, Mockler, T, Fernie A, Stitt M, Liu P & Brutnell TP (2014). Comparative analysis of C4 and C3 photosynthesis in developing leaves of maize and rice. Nat Biotech, 32(11):1158-1165.

  • Li P, Ponnala L, Gandotra N, Wang L, Si Y, Tausta SL, Kebrom T, Provart N, Patel R, Myers CR, Reidel E, Turgeon R, Liu P, Sun Q, Nelson T & Brutnell TP (2010). The developmental dynamics of the maize leaf transcriptome. Nat Genet, 42:1060-1067.

  • Brutnell TP, Bennetzen JL & Vogel JP (2015). Brachypodium distachyon and Setaria viridis: model genetic systems for the grasses. Annu Rev Plant Biol, 66:465-85.

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James Carrington

  • Vogel JP, Bevan M, et al (2010). Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature, 463(7282):763-8.

  • Jeong D, Schmidt SA, Rymarquis LA, Park P, Ganssmann M, German MA, Accerbi M, Zhai J, DePaoli E, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC & Green PJ (2013). Parallel Analysis of RNA Ends enhances global investigation of MicroRNAs and target RNAs of Brachypodium distachyon. Genome Biol, 14(12):R145.

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Dan Chitwood

  • Chitwood DH, Ranjan A, Kumar R, Ichihashi Y, Zumstein K, Headland LR, Ostria-Gallardo E, Aquilar-Martinez JA, Bush S, Carriedo L, Fulop D, Martinez CC, Peng J, Maloof JN, & Sinha NR (2014). Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context. Plant Cell, 26(9):3616-29.

  • Chitwood DH & Topp CN (2015). Revealing plant cryptotypes: defining meaningful phenotypes among infinite traits. Curr Opin Plant Biol, 24:54-60.

  • Chitwood DH, Kumar R, Headland LR, Ranjan A, Covington MF, Ichihashi Y, Fulop D, Jimenez-Gomez JM, Peng J. Maloof JN & Sinha NR (2013). A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines. Plant Cell, 25(7):2465-81.

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Andrea Eveland

  • Pautler M, Eveland AL, LaRue T, Weeks R, Lunde C, Komatsu M, Vollbrecht E, Sakai H &    Jackson D (2015). FASCIATED EAR4 encodes a bZIP transcription factor that controls shoot meristem size in maize. Plant Cell, 27(1):104-20.

  • Eveland AL, Goldshmidt A, Pautler M, Morohashi K, Liseron-Monfils C, Lewis MW, Kumari S, Hiraga S, Yang F, Unger-Wallace E, Olson A, Hake S, Vollbrecht E, Grotewold E, Ware D & Jackson D (2014). Regulatory modules controlling maize inflorescence architecture. Genome Res, 24(3):431-43.

  • Eveland AL & Jackson D (2012). Sugars, signalling, and plant development. J Exp Bot, 63(9):3367-77.

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Elizabeth Kellogg

  • Welker CAD, Teixeira de Souza-Chies T, Longhi-Wagner HM, Peichoto MC, McKain MR & Kellogg EA (2015). Phylogenetic analysis of Saccharum s.l. (Poaceae-Andropogoneae), with emphasis on the South American species. Am J Bot, 102(2):248-63.

  • Huang P, Feldman M, Schroder S, Bahri BA, Diao X, Zhi H, Estep M, Baxter I, Devos K & Kellogg EA (2014). Population genetics of Setaria viridis, a new model system. Mol Ecol, 23(20):4912-25.

  • Estep MC, McKain MR, Vela Diaz D, Zhong J, Hodge J, Hodkinson T, Malcomber ST, Pasquet R & Kellogg EA (2014). Allopolyploidy, diversification, and the Miocene grassland expansion. Proc Natl Acad Sci USA, 111(42):15149-54.

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Toni Kutchan

  • Matasci N, Hung LH, Yan Z, Carpenter EJ, Wickett NJ, Mirarab S, Nguyen N, Warnow T, Ayyampalayam S, Barker M, Burleigh JG, Gitzendanner MA, Wafula E, Der JP, dePamphilis CW, Roure B, Philippe H, Ruhfel BR, Miles NW, Graham SW, Mathews S, Surek B, Melkonian M, Soltis DE, Soltis PS, Rothfels C, Pokorny L, Shaw JA, DeGironimo L, Stevenson DW, Villarreal JC, Chen T, Kutchan TM, Rolf M, Baucom RS, Deyholos MK, Samudrala R, Tian Z, Wu X, Sun X, Zhang Y, Wang J, Leebens-Mack J & Wong GK (2014). Data access for the 1,000 Plants (1KP) project. Gigascience, 3:17.

  • Wickett NJ, Mirarab S, Nguyen N, Warnow T, Carpenter E, Matasci N, Ayyampalayam S, Barker MS, Burleigh JG, Gitzendanner MA, Ruhfel BR, Wafula E, Der JP, Graham SW, Mathews S, Melkonian M, Soltis DE, Soltis PS, Miles NW, Rothfels CJ, Pokorny L, Shaw AJ, DeGironimo L, Stevenson DW, Surek B, Villarreal JC, Roure B, Philippe H, dePamphilis CW, Chen T, Deyholos MK, Baucom RS, Kutchan TM, Augustin MM, Wang J, Zhang Y, Tian Z, Yan Z, Wu X, Sun X, Wong GK & Leebens-Mack J (2014). Phylotranscriptomic analysis of the origin and early diversification of land plants. Proc Natl Acad Sci USA, 111(45):E4859-68.

  • Cannon SB, McKain MR, Harkess A, Nelson MN, Dash S, Deyholos MK, Peng Y, Joyce B, Stewart CN Jr, Rolf M, Kutchan T, Tan X, Chen C, Zhang Y, Carpenter E, Wong GK, Doyle JJ & Leebens-Mack J (2015). Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes. Mol Biol Evol, 32(1):193-210.

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Todd Mockler

  • Gordon S, Priest H, Des Marais D, Schackwitz W, Figueroa M, Martin J, Bragg J, Tyler L, Lee CR, Bryant D, Wang W, Messing J, Manzaneda A, Barry K, Garvin D, Budak H, Tuna M, Mitchell-Olds T, Pfender W, Juenger T, Mockler TC, & Vogel J. (2014). Genome diversity in Brachypodium distachyon: Deep sequencing of highly diverse inbred lines. Plant J, 79(3):361-74.

  • Wang W, Haberer G, Gundlach H, Gläßer C, Nussbaumer T, Luo MC, Lomsadze A, Borodovsky M, Kerstetter R, Shanklin J, Mockler T, Bryant D, Appenroth K, Grimwood J, Jenkins J, Chow J, Choi C, Adam C, Cao X-H, Fuchs J, Schubert I, Rokhsar D, Schmutz J, Michael T, Mayer K & Messing J (2014). The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. Nat Commun, 5:3311.

  • Priest HD, Fox SE, Rowley ER, Murray JR, Michael TP & Mockler TC (2014). Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress. PLoS ONE, 9(1):e87499.

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Dmitri Nusinow

  • Nusinow DA, Helfer A, Hamilton EE, King JJ, Imaizumi T, Schultz TF, Farre EM, Kay SA (2011) The ELF4-ELF3-LUX Complex Links the Circadian Clock to Diurnal Control of Hypocotyl Growth. Nature, Jul 21;475(7356):398-402 Published online July 13, 2011.

  • Helfer A, Nusinow DA, Chow BY, Gehrke AR, Bulyk ML, Kay SA (2011) LUX ARRHYTHMO Encodes a Nighttime Repressor of Circadian Gene Expression in the Arabidopsis Core Clock. Current Biology, Jan 25;21(2):126-33. Published online January 13, 2011.

  • Sawa M, Nusinow DA, Kay SA, and Imaizumi T (2007) FKF1 and GIGANTEA complex formation is critical for day-length measurement in Arabidopsis. Science, 318(5848): 261-5. Published online September 13, 2007.

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Chris Topp

  • Symonova O, Topp CN & Edelsbrunner H (2015). Dynamic Roots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots. PloS One, 10(6), e0127657.

  • Wang Q, Komarov S, Mathews AJ, Li K, Topp C, O'Sullivan JA & Tai YC (2014). Combined 3D PET and Optical Projection Tomography Techniques for Plant Root Phenotyping. arXiv:1501.00242v1, q-bio.QM.

  • Topp CN, Iyer-Pascuzzi AS, Anderson JT, Lee CR, Symonova O, Zurek P, Zheng Y, Bucksch A, Milyeko Y, Galkovskyi T, Moore BT, Harer J, Edelsbrunner H, Mitchell-Olds T, Weitz JS, Benfey PN. 3-dimensional phenotyping of growing root systems and QTL mapping identifies core regions of the rice genome controlling root architecture (2013). Proc Natl Acad Sci USA, 110 (18):E1695-704.

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James Umen

  • Blaby IK, Blaby-Haas CE, Tourasse N, Hom EFY, Lopez D, Aksoy M, Grossman A, Umen J, Dutcher S, Porter M, King S, Witman GB, Stanke M, Harris EH, Goodstein D, Grimwood J, Schmutz J, Vallon O, Merchant SS & Prochnik S (2014). The Chlamydomonas Genome Project: a Decade on. Trends Plant Sci, 19(10):672-80.

  • Goodenough U, Blaby I, Casero D, Gallaher SD, Goodson C, Johnson S, Lee J-H, Merchant SS, Pellegrini M, Roth R, Rusch J, Singh M, Umen JG, Weiss TL & Wulan T (2014). The Path to Triacylglyceride Obesity in the Sta6 Strain of Chlamydomonas Reinhardtii. Eukaryot Cell, 13(5):591-613.

  • Olson BJSC, Oberholzer M, Li Y, Zones JM, Kohli HS, Bisová K, Fang S-C., Meisenhelder J, Hunter T & Umen JG (2010). Regulation of the Chlamydomonas Cell Cycle by a Stable, Chromatin-Associated Retinoblastoma Tumor Suppressor Complex. Plant Cell, 22(10):3331-47.

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Sam Wang

  • Li M, Wei F, Tawfall A, Tang M, Saettele A & Wang X. (2015). Overexpression of patatin-related phospholipase AIIIδ altered plant growth and increased seed oil content in camelina. Plant Biotechnol J, 13:766-778.

  • Li M, Butka E & Wang X. (2014). Comprehensive quantification of triacylglycerols in soybean seeds by electrospray ionization mass spectrometry with multiple neutral loss scans. Sci Rep, 4:6581.

  • Guo L, Ma F, Wei F, Fanella B, Allen DK, & Wang X. (2014). Cytosolic phosphorylating glyceraldehyde-3-phosphate dehydrogenases affect Arabidopsis cellular metabolism and promote seed oil accumulation. Plant Cell, 26(7):3203-35.

All publications