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The Proteomics & Mass Spectrometry Facility |
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| Publications: |
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Alvarez S, Berla BM, Sheffield J,
Cahoon RE, Jez JM, and Hicks LM. Comprehensive analysis
of the Brassica juncea root proteome in response to cadmium
exposure by complementary proteomic approaches. Proteomics, 2009,
in press. |
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Zhang J, Subramanian S, Stacey
G, Yu O. Different flavonoids have distinct functions during
Medicago truncatula
nodulation by Sinorhizobium meliloti.
Plant J.
2009,
57, 171-183. |
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Phillips G, El Yacoubi B, Lyons
B, Alvarez S,
Iwata-Reuyl D, de Crécy-Lagard V. The biosynthesis of the
7-deazaguanosine modified tRNA nucleosides: a new role for GTP
cyclohydrolase-I. J. Bacteriol., 2008, 190,7876-7884. |
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Chen H, Hu J, Chen PR, Lan L, Li
Z, Hicks LM,
Dinner AR, He C. The Pseudomonas aeruginosa multidrug efflux regulator
MexR uses an oxidation sensing mechanism.
Proc. Natl. Acad. Sci. USA,
2008,
105, 13586-13591. |
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Hong Y, Pan X, Welti R, Wang X.
Phospholipase Da3 Regulates Arabidopsis Response to Salinity and Water
Deficits, Plant Cell,
2008,
20, 803-16. |
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Pan X, Welti R, Wang X.
Simultaneous quantification of phytohormones and related metabolites in
crude plant extracts by LC-MS/MS,
Phytochemistry,
2008, 69,
1773-1781. |
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Alvarez S, Marsh EL, Schroeder
SG, Schachtman DP. Metabolomic and proteomic changes in the xylem sap of
maize under drought, Plant Cell and
Environment,
2008, 31,
325-340. |
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Sarma AD, Oehrle NW, Emerich DW.
Plant protein isolation and stabilization for enhanced resolution of
two-dimensional polyacrylamide gel electrophorsis.
Anal. Biochem.,
2008,
379, 192-195 |
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Schroeder AC, Kumaran S,
Hicks LM, Cahoon RE, Halls
C, Yu O, Jez JM. Contributions of conserved serine and tyrosine residues
to catalysis, ligand binding, and cofactor processing in the active site
of tyrosine ammonia lyase. Phytochemistry,
2008,
69, 1496-1506. |
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Nagamune K, Hicks LM, Fux B, Brossier F, Chini EN,
Sibley LD. The plant hormone abscisic acid controls calcium-dependent
egress and development in the parasite
Toxoplasma gondii,
Nature,
2008, 451, 207-211. |
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Zhu J, Alvarez S, Marsh EL, LeNoble ME, Cho IJ, Sivaguru M,
Chen S, Nguyen HT, Wu Y, Schachtman DP, Sharp RE. Cell wall
proteome in the maize primary root elongation zone. Region-specific
changes in water soluble and lightly ionically-bound proteins under
water deficit, Plant Physiology,
2007, 145,
1533-1548. |
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Earley KW, Shook MS, Brower-Toland B,
Hicks LM,
Pikaard CS. In vitro specificities of Arabidopsis co-activator histone
acetyltransferases: implications for histone hyperacetylation in gene
activation, The Plant Journal,
2007, 52, 615-626. |
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Jez JM, Schachtman DP, Berg RH, Taylor CG,
Chen S,
Hicks LM, Jaworski JG, Smith TJ, Nielsen E, Pikaard CS.
Developing a new interdisciplinary lab course for undergraduate and
graduate students: plant cells and proteins,
Biochem. Mol. Biol.
Educ.,
2007, 35, 410-415. |
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Hicks LM, Cahoon RE, Bonner ER, Rivard RS,
Sheffield J, Jez JM. In vitro and in vivo disulfide bond
regulation of redox-active glutamate-cysteine ligase from
Arabidopsis thaliana,
Plant Cell,
2007,
19, 2653-2661. |
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Yang W, Devaiah SP, Pan X, Isaac G, Welti R, Wang X. AtPLAI is an
acyl hydrolase involved in basal jasmonic acid production and
Arabidopsis resistance to Botrytis cinerea.
Journal of
Biological Chemistry,
2007, 282, 18116-18128. |
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Katpally U, Smith TJ. Pocket factors are unlikely to play a major
role in the life cycle of human rhinovirus,
Journal of Virology,
2007,
81, 6307-6315. |
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Brendza KM, Haakenson W, Cahoon RE,
Hicks LM,
Palavalli LH, Chiapelli BJ, McLaird M, McCarter JP, Williams DJ, Hresko
MC, and Jez JM. Phosphoethanolamine N-methyltransferase (PMT-1)
catalyses the first reaction of a new pathway for phosphocholine
biosynthesis in Caenorhabditis elegans,
Biochemical Journal,
2007, 404, 439-448. |
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Livingstone D, Beilinson V, Kalyaeva M, Schmidt MA, Herman EM,
Nielsen NC. Reduction of protease inhibitor activity by expression of a
mutant Bowman-Birk gene in soybean seed,
Plant Molecular Biology,
2007, 64, 397-408. |
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Moravec T, Schmidt MA, Herman EM, Woodford-Thomas T. Production of
Escherichia coli heat labile toxin (LT) B subunit in soybean
seed and analysis of its immunogenicity as an oral vaccine,
Vaccine,
2007, 25, 1647-1657. |
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Shin R, Alvarez S, Burch AY, Jez JM, Schachtman DP. Phosphoproteomic
identification of targets of the Arabidopsis SNF-like protein kinase
SnRK2.8 reveals a connection to metabolic processes,
Proc. Natl.
Acad. Sci. USA,
2007, 104, 6460-6465. |
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Graham TL, Graham MY, Subramanian S, Yu O. RNAi silencing of genes
for elicitation or biosynthesis of 5-deoxyisoflavonoids suppresses
race-specific resistance and HR cell death in
Phytophthora sojae
infected tissues, Plant Physiology,
2007, 144,
724-740. |
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Zhang J, Subramanian S, Zhang Y, Yu O. Flavone synthases from
Medicago truncatula are flavanone-2-hydroxylases and are important
for nodulation, Plant Physiology,
2007, 144,
741-751. |
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Tsegaye Y, Richardson CG, Bravo JE, Mulcahy BJ, Lynch DV, Markham
JE, Jaworski JG, Chen M, Cahoon EB, Dunn TM. Arabidopsis Mutants Lacking
Long Chain Base Phosphate Lyase Are Fumonisin-sensitive and Accumulate
Trihydroxy-18:1 Long Chain Base Phosphate,
Journal of Biological
Chemistry,
2007, 282, 28195-281206. |
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Markham JE, Jaworski JG. Rapid measurement of sphingolipids from
Arabidopsis thaliana by reversed-phase high-performance liquid
chromatography coupled to electrospray ionization tandem mass
spectrometry, Rapid Communications in Mass Spectrometry,
2007, 21, 1304-1314. |
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Herman EM, Rotter K, Premakumar R, Elwinger G, Bae R, Ehler-King L,
Chen S, Livingston DP 3rd. Additional freeze hardiness
in wheat acquired by exposure to -3°C is accociated with extensive
physiological, morphological and molecular changes,
Journal of
Experimental Botany,
2006, 57, 3601-3618. |
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Zhang Y, Li SZ, Li J, Pan X, Cahoon RE, Jaworski JG, Wang X, Jez JM,
Chen F, Yu O. Using unnatural protein fusions to engineer resveratrol
biosynthesis in yeast and Mammalian cells,
Journal of the American
Chemistry Society,
2006, 128, 13030-13031.
Featured in Chemical and Engineering News, 84 (Oct. 2, 2006): page 43. |
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Subramanian S, Stacey G, Yu O. Endogenous isoflavones are essential
for the establishment of symbiosis between soybean and Bradyrhizobium
japonicum, Plant Journal,
2006, 48, 261-273. |
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Markham JE, Li J, Cahoon EB, Jaworski JG Separation and
identification of major plant sphingolipid classes from leaves,
The
Journal of Biological Chemistry,
2006, 281,
22684-22694. |
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Palavalli LH, Brendza KM, Haakenson W, Cahoon RE, McLaird M,
Hicks LM, McCarter JP, Williams DJ, Hresko MC, Jez JM Defining
the role of phosphomethylethanolamine N-methyltransferase from
Caenorhabditis elegans in phosphocholine biosynthesis by
biochemical and kinetic analysis, Biochemistry,
2006,
45, 6056-6065. |
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Alvarez S, Goodger JQD, Marsh EL,
Chen S,
Asirvatham VS, Schachtman DP Characterization of the maize xylem sap
proteome, Journal of Proteome Research,
2006,
5, 963-972. |
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Joseph LM, Hymowitz T, Schmidt MA, Herman EM Evaluation of glycine
germplasm for nulls of the immunodominant allergen P34/Gly m BD 30k,
Crop Science,
2006, 46, 1755-1763. |
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Sheffield J, Fauquet C, Taylor N,
Chen S
The cassava (Manihot esculenta Crantz) root proteome: Protein
identification and differential expression,
Proteomics,
2006, 6, 1588-1598. |
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Zhu J,
Chen S, Alvarez, S, Asirvatham V, Schachtman
DP, Wu Y, Sharp RE Cell wall proteome in the maize primary root
elongation zone. I. Extraction and identification of water-soluble and
lightly ionically bound proteins, Plant Physiology,
2006, 140, 311-325.
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Chen S Rapid protein identification using direct
infusion nanoelectrospray ionization mass spectrometry,
Proteomics,
2006, 6, 16-25. |
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Bonner ER, Cahoon RE, Knapke SM, Jez JM Molecular basis for cysteine
biosynthesis in plants: Structural and functional analysis of
O-acetylserine
sulfhydrylase from Arabidopsis thaliana, The Journal of Biological
Chemistry,
2005, 280, 38803-38813. |
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