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ILTAB Publications from 1999 to present

Special Issues of Electronic Journals


Taylor, N., Kent, L. and Fauquet, C. M., Eds. (2004). Special Issue: Progress, Achievements and Constraints for Plant Biotechnology in Developing Countries. AgBioForum, The Journal of Agrobiotechnology Management and Economics. Vol. 7, Numbers 1 and 2.


Electronic Book Chapters

Fauquet, C. M. (2004). Viral classification and nomenclature. In: Encyclopedia of Life Sciences. London: Nature Publishing Group. [doi: 10.1038/npg.els.0000440] http://www.els.net/

Fauquet, C. M. (2001). Viral classification and nomenclature. In: Encyclopedia of Life Sciences. London: Nature Publishing Group. [doi: 10.1038/npg.els.0000440] http://www.els.net/

Books

Fauquet, C.M., Mayo, M.A., Maniloff, J., Desselberger, U., and Ball, L.A. (Eds.)(2005). Virus Taxonomy, VIIIth Report of the ICTV.  Elsevier/Academic Press, London, pp. 1258.

van Regenmortel, M. H. V., Fauquet, C. M., Bishop, D. H. L., Carstens, E., Estes, M. K., Lemon, S., Maniloff, J. Mayo, M. A., McGeoch, D., Pringle, C. R., and Wickner, R. B., (Eds.). (1999). Virus Taxonomy.  Seventh Report of the International Committee on Taxonomy of Viruses. London, San Diego: Academic Press, 1186pp.

Special Issues of Journals

Fauquet, C.M., Ceballos, H., and Zhang, P. Eds. (2004).  Special Cassava Issue.  Plant Molecular Biology, Vol. 56, issue 4.

Book Chapters

Abhary, M., Patil, B. L., and Fauquet, C.M. (2007). Molecular biodiversity, taxonomy and nomenclature of Tomato yellow leaf curl-like viruses, In Czosnek, H. (Ed.) Tomato yellow leaf curl virus disease. Springer, New York.

Martelli, G., Fauquet, C.M. and Gallitelli, D. (2007). Emerging and reemerging virus diseases, In Mahy, B. and Van Regenmortel, M. (Eds.), Encyclopedia of Virology.  Elsevier, London.

Fauquet, C.M. (2007). Viral classification and nomenclature, In Mahy, B. and Van Regenmortel, M. (Eds.), Encyclopedia of Virology.  Elsevier, London.

Shah Nawaz-ur-Rehman, M. and Fauquet, C.M. (2007). Emerging Geminiviruses, In Mahy, B. and Van Regenmortel, M. (Eds.), Encyclopedia of Virology.  Elsevier, London.

Vanitharani, R., Chellappan, P. and Fauquet, C.M. (2005). RNAi and gene silencing phenomena mediated by viral suppressors in plants. In Krishnarao Appasani (Ed.), RNA Interference Technology: From Basic Science to Drug Development. Cambridge University, Cambridge, UK. Pp. 280-299.

Fauquet, C.M. (2004). Family Geminiviridae.  In Lapierre, H. and Signoret, P.-A. (Eds.), Viruses and virus diseases of Poaceae (Gramineae).  INRA Editions, Versailles, France.

Yadav, J.S., Fauquet, C.M. and Beachy, R.N. (2004).  Control of plant virus diseases. In Robert M. Goodman (Ed.), Encyclopedia of Plant and Crop Science. Marcel Dekker, New York.

Fofana, I.B.F., Sangaré, A., Ndunguru, J., Kahn, K. and Fauquet, C.M. (2003). Principles for control of virus diseases in developing countries.  In Gad Loebenstein and George Thottapilly (Eds.), Virus and virus-like diseases of major crops in developing countries: Kluwer Academic, Dordrecht, The Netherlands.

Fauquet, C. (2001). Virus Nomenclature. In  Otis C. Maloy and Timothy D. Murray (eds.)  Encyclopedia of Plant Pathology (Vol. 2, pp. 1125-1137). New York : J. Wiley, 2001.

Fauquet, C. M. (1999). Taxonomy, Classification and Nomenclature of Viruses. In Encyclopedia of Virology, Second Edition (Vol. 3, p.1730-1756). London, U.K.: Academic Press, Harcourt Brace and Co.

Taylor, N., Masona, M. V., Schöpke, C. and Fauquet, C. M. (1999). Transgenic cassava for food security and economic development. In G. Khachatourians (Ed.), Transgenic Plants and Crops (2002): Marcel Dekker, New York, Basel.

Chatterji, A., and Fauquet, C. M. (1999). Ecology of plant viruses with special reference to whitefly transmitted geminiviruses (WTGs). In C. J. Hurst (Ed.), Viral Ecology (2000): Academic Press, New York.

Articles in Refereed Journals

2008

Briddon, R. W., Brown, J. K., Moriones, E., Stanley, J., Zerbini, M., Zhou, X.  and Fauquet, C. M.  (2008).  Recommendations for the classification and nomenclature of the DNA-β satellites of begomoviruses. Archives of Virology DOI 10.1007/s00705-007-0013-6.


Chakraborty, S., Vanitharani, R., Chattopadhyay, B.  and Fauquet, C. M. (2008). Supervirulent pseudorecombination and asymmetric synergism between genomic components of two distinct species of begomovirus associated with severe tomato leaf curl disease in India. Journal of General Virology. 89: 818-828.


Chattopadhyay, B., Singh, A. K., Yadav, T., Fauquet, C. M., Sarin, N.B. and
Chakraborty, S. (2008). Infectivity of the cloned components of a begomovirus: DNA beta complex causing chilli leaf curl disease in India. Archives of Virology
153: 533-539. DOI 10.1007/s00705-007-0017-2.

Fauquet, C. M., Briddon, R. W., Brown, J. K., Moriones, E., Stanley, J., Zerbini, M. and Zhou, X. (2008). Geminivirus strain demarcation and nomenclature. Archives of Virology 153: 783-821. DOI 10.1007/s00705-008-0037-6.

2006

Fargette, D., Konate, G., Fauquet, C., Muller, E., Peterschmitt, M. and Thresh, J.M. (2006). Molecular ecology and emergence of tropical plantviruses. Annual Review of Phytopathology. 44:235-60.

    


Fauquet, C. M. (2006). The diversity of single stranded DNA viruses. Biodiversity (Ottawa). 7: 38-44.


Hankoua, B. B., Taylor, N. J., Ng, S. Y. C., Fawole, I., Puonti-Kaerlas, J., Padmanabhan, C., Yadav, J. S., Fauquet, C. M., Dixon, A. G. O., Fondong, V. N. (2006). Production of the first transgenic cassava in Africa via direct shoot organogenesis from friable embryogenic calli and germination of maturing somatic embryos. African Journal of Biotechnology. 5: 1700-1712.


J. Ndunguru, Legg, J. P., Fofana, I. B. F., Aveling, T. A. S., Thompson, G.   and  Fauquet, C. M. (2006) Identification of a defective molecule derived from DNA-A of the bipartite begomovirus of East African cassava mosaic virus. Plant Pathology. 55: 2-10. Doi: 10.1111/j.1365-3059.2005.01289.x. Online publication date: 14-Oct-2005.

    

Raven, P, Fauquet, C, Swaminathan, M.S., Borlaug, N. and Samper, C. (2006). Where next for genome sequencing? Science.311:468-468. DOI:10.1126/science.311.5760.468b

 

Kouassi, N.K, Chen, L., Siré, C., Bangratz-Reyser, M., Beachy, R.N., Fauquet, C.M. and Brugidou, C. (2006) Expression of rice yellow mottle virus coat protein enhances virus infection in transgenic plants. Archives of Virology, 151:2111-2122. DOI: 10.1007/s00705-006-0802-3.

    

Sheffield, J., Taylor, N., Fauquet, C. and  Chen, S. (2006). The cassava (Manihotesculenta Crantz) root proteome: Protein identification and differential expression.  PROTEOMICS, 6:1588-1598

    

2005

Adams, M.J., Antoniw, J.F., and Fauquet, C.M. (2005). Molecular Criteria for Genus and Species Discrimination within the Family Potyviridae. Archives of Virology. 150:459-479. DOI: 10.1007/s00705-004-0440-6.

 

Altpeter, Fredy, Baisakh, Niranjan, Beachy, Roger, Bock, Ralph, Capell, Teresa, Christou, Paul, Daniell, Henry, Datta, Karabi, Datta, Swapan, Dix, Philip J., Fauquet, Claude, Huang, Ning, Kohli, Ajay, Mooibroek, Hans, Nicholson, Liz, Nguyen, Thi Thanh, Nugent, Gregory, Raemakers, Krit, Romano, Andrea, Somers, David A., Stoger, Eva, Taylor, Nigel, and Visser, Richard. (2005). Particle bombardment and the genetic enhancement of crops: myths and realities. Molecular Breeding. 15:305–327. DOI 10.1007/s11032-004-8001-y.

 

Chellappan, P., Vanitharani, R.and Fauquet, C.M. 2005. MicroRNA binding viral protein interferes with Arabidopsis development. PNAS. 102:10381-10386.

 

Chellappan, P., Vanitharani, R., Ogbe, F. and Fauquet, C.M. (2005). Effect of Temperature on Geminivirus-Induced RNA Silencing in Plants. 2005. Plant Physiology. 138:1828-1841. DOI: 10.1104/p.105.066563.

 

Fauquet, C.M. and Fargette, D. (2005). International Committee on Taxonomy of Viruses and the 3,142 unnamed species. Virology Journal. 2:64. doi:10.1186/1743-422X-2-64.

 

Fauquet, C. M., Sawyer, S., Idris, A. M. and Brown, J. K. (2005) Sequence Analysis and Classification of Apparent Recombinant Begomoviruses Infecting Tomato in the Nile and Mediterranean Basins . Phytopathology. 95:549-555. DOI: 10.1094/PHYTO-95-054

Fauquet, C. M. and Stanley, J. Revising the way we conceive and name viruses below the species level: A review of geminivirus taxonomycalls for new standardized isolate descriptors. Archives of Virology. 150:2151 - 2179.

Kouassi, N. K., N’Guessan, P., Albar, L., Fauquet, C. M. and Brugidou. C. (2005). Distribution and Characterization of Rice yellow mottle virus: A Threat to African Farmers.  Plant Disease. 89:124-133. DOI: 10.1094/PD-89-0124.

Marmey, P., Rojas-Mendoza, A., de Kochko, A., Beachy, R.N., and Fauquet, C.M. (2005). Characterization of the protease domain of Rice tungro bacilliform virus responsible for the processing of the capsid protein from the  polyprotein. Virology Journal. 2:33 (14 April 2005) doi:10.1186/1743-422X-2-33.

Ndunguru, J., Legg, J.P., Thompson, G., Aveling, T. and Fauquet, C.M. (2005). Molecular biodiversity of cassava begomoviruses in Tanzania: evolution of cassava geminiviruses in Africa and evidence for East Africa.being a center of diversity of cassava geminiviruses. Virology Journal. 2:21 (22 March 2005). doi:10.1186/1743-422X-2-21.

Ndunguru, J., Taylor, N.J., Yadav, J., Aly, H., Legg, J.P., Aveling, T., Thompson, G., Fauquet, C.M. (2005). Application of FTA technology for sampling, recovery and molecular characterization of viral pathogens and virus-derived transgenes from plant tissues. Virology Journal 2:45 (18 May 2005)  doi:10.1186/1743-422X-2-45.

Vanitharani, R., Chellappan, P. and Fauquet, C.M. 2005. Geminiviruses and RNA Silencing. Trends
in Plant Science. 10:1360-1385. doi:10.1016/j.tplants.2005.01.005.

 

2004

Adams, M.J., Antoniw, J.F., Bar-Joseph, M., Brunt, A.A., Candresse, T., Foster, G.D., Martelli, G.P., Milne, R.G. and Fauquet, C.M. (2004). The new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation. Archives of Virology 149:1045-60.

Berry, Shaun D; Fondong, Vincent N.; Bey, Christine; Rogan, Donald; Fauquet, Claude M.; Brown, Judith K. Molecular evidence for five distinct Bemisia tabaci (Homoptera: Aleyrodidae) geographic haplotypes associated with cassava plants in sub-Saharan Africa. Annals of the Entomological Society of America. 97(4). July 2004. 852-859.

Chellappan, P., Masona, M.V., Vanitharani, R., Taylor, N.J. and Fauquet, C.M. (2004). Broad Spectrum Resistance to ssDNA Viruses associated with transgene-induced gene silencing in cassava. Plant Molecular Biology. 56:601-611.

Chellappan, P., Vanitharani, R. and Fauquet, C.M. (2004). Short interfering RNA accumulation correlates with host recovery in DNA virus infected hosts and gene silencing targets specific viral sequences. Journal of Virology. 78: 7465-7477.

Cui, X., Tao, X., Xie, Y., Fauquet, C.M. and Zhou, X. 2004 A DNA beta associated with Tomato Yellow Leaf Curl China Virus is required for symptom induction.  Journal of Virology. 78:13966-13974.

Fargette, D., Pinel, A., Abubakar, Z., Traore, O., Brugidou, C., Fatogoma, S., Hebrard, E., Choisy M., Sere, Y., Fauquet, C.M. and Konate, G. (2004). Inferring the evolutionary history of Rice yellow mottle virus from genomic, phylogenetic and phylogeopgraphic studies.  Journal of Virology. 78: 3252-3261.

Fauquet, C.M. and Tohme, J. (2004). The Global Cassava Partnership for Genetic Improvement. Plant Molecular Biology. 56:V-X.

Fofana, I.B.F., Sangare, A., Collier, R., Taylor, C. and Fauquet, C.M. (2004). A geminivirus-induced gene silencing system for gene function validation in cassava. Plant Molecular Biology. 56:613-624.

Legg, J.P. and Fauquet, C.M. (2004). Cassava mosaic Geminiviruses in Africa. Plant Molecular Biology.56:585-599.

Taylor, N.J., Kent, L. and Fauquet, C.M. (2004). Progress and challenges for the deployment of transgenic technologies in cassava.  AgBioForum.  7:51-56 .

Taylor, N.J., Chavarriaga, P., Raemakers, K., Siritunga, D. and Zhang, P. (2004) Development and application of transgenic technologies in cassava. Plant Molecular Biology. 56:671-688.

Vanitharani, R., Chellappan, P., Pita, J. and Fauquet, C.M. (2004). Differential roles of AC2 and AC4 of cassava geminiviruses in mediating synergism and suppression of post-transcriptional gene silencing suppression. Journal of Virology. 78:9487-9498.

de Villiers EM, Fauquet C, Broker TR, Bernard HU, zur Hausen H. (2004). Classification of papillomaviruses. Virology 324:17-27.

Voloudakis, A.E., Malpica, C.A. , Aleman-Verdaguer, M.-E., Stark, D.M., Fauquet, C.M. and Beachy, R.N. (2004). Structural characterization of Tobacco etch virus coat protein mutants. Archives of Virology. 149:699-712.

 

2003

Chakraborty, S., Pandey, P.K., Banerjee, M.K., Kalloo, G. and Fauquet, C.M. (2003). A new Begomovirus species causing tomato leaf curl disease in Varanasi, India. Plant Disease, 87:313.

Chakraborty, S., Pandey, P.K., Banerjee, M.K., Kalloo, G. and Fauquet, C.M. (2003). Tomato leaf curl Gujarat virus, a new Begomovirus species causing a severe leaf curl disease of tomato in Varansi, India. Phytopathology, 93:1485-1495.

Fauquet, C.M. and Stanley, J. (2003). Geminivirus Classification and Nomenclature: progress and problems. Annals of Applied Biology, 142:165-189.

Fauquet, C.M., Bisaro, D.M., Briddon, R.W, Brown, J., Harrison, B.D., Rybicki, E.P., Stenger, D.C. and Stanley, J. (2003). Revision of taxonomic criteria for species demarcation in the family Geminiviridae, and an updated list of begomovirus species.  Archives of Virology, 148:405-421.

Lotrakul, P., Valverde, R.A., Clark, C.A. and Fauquet, C.M. (2003). Properties of a Begomovirus Isolated from Sweet Potato [Ipomoea batatas (L.) Lam.] Infected with Sweet potato leaf curl virus.  Revista Mexicana de Fitopatología 21:128-136.

Mansoor, S., Briddon, R.W., Bull, S.E., Bedford, I.D., Bashir, A., Hussain, M., Saeed, M., Zafar, Y., Malik, A., Fauquet, C.M. and Markham, P.G.. (2003). Cotton leaf curl disease is associated with multiple monopartite begomoviruses supported by single DNA beta. Archives of Virology 148:1969-1986.

Mayo, M.A., Fauquet, C.M. and Maniloff, J. (2003). Taxonomic proposals on the web: New ICTV consultative procedures. Archives of Virology, 148:609-611.

Méndez-Lozano, J., Torres-Pacheco, I., Fauquet, C.M., Rivera-Bustamente, R.F. (2003). Interactions between Geminiviruses in a naturally occurring mixture: Pepper huasteco virus and Pepper golden mosaic virus. Phytopathology, 93:270-277.

Vanitharani R., Chellappan P. and Fauquet, C.M. (2003). siRNA-mediated interference of gene expression and viral DNA accumulation in cultured plant cells. PNAS, 100: 9632-9636. Published online July 28, 2003, 10.1073/pnas.1733874100.

Zhou, X., Xie, Y., Tao, X., Zhang, Z., Li, Z. and Fauquet, C.M. (2003). Characterization of DNA-beta associated with begomoviruses in China and evidence for co-evolution with their cognate viral DNA-A. Journal of General Virology, 84:237-247.

2002

Brugidou, C., Opalka, N., Yeager, M., Beachy, R.N. and Fauquet, C.M.  (2002). Stability of Rice yellow mottle virus and cellular compartmentalization during the infection process in Oryza sativa (L).  Virology, 297: 98-108.

Fargette D, Pinel A, Halimi H, Brugidou C., Fauquet, C.M. and van Regenmortel M.H.V. (2002). Comparison of molecular and immunological typing of isolates of Rice yellow mottle virus. Archives of Virology, 147: 583-596

Mayo, M.A., Maniloff, J., van Regenmortel, M.H.V. and Fauquet, C.M. (2002).
The type species in virus taxonomy. Archives of Virology, 147:1271-1274.

Taylor, N.J. and Fauquet, C.M. (2002). Microparticle bombardment as a tool in plant science and agricultural biotechnology.  DNA and Cell Biology, 21:963-977.

van Regenmortel, M.H.V. and Fauquet, C.M. (2002). Utilisation d’un système binomial pour les noms d’espèces virales.  Qu’en pense la communauté des virologues?  Virologie, 6:70-73.

van Regenmortel, M.H.V. and Fauquet, C.M. (2002). Only italicised species names of viruses have a taxonomic meaning. Archives of Virology, 147: 2247-2250.

2001

Bigarré L., Chazly M., Salah M., Ibrahim M., Padidam M., Nicole M., Peterschmitt M., Fauquet, C.M. and Thouvenel, J.C. (2001).  Characterization of a new begomovirus from Egypt infecting hollyhock (Althea rosea). European Journal of Plant Pathology, 107: 701-711.

Chatterji, A., Beachy, R. and Fauquet, C.M. (2001).  Expression of the oligomerization domain of the replication-associated protein (Rep) of Tomato leaf curl New Delhi virus interferes with DNA accumulation of heterologous geminiviruses.  Journal of Biological Chemistry, 276: 25631-25638. JBC Online, www.jbc.org.

Dai, S., Zheng, P., Marmey, P., Zhang, S., Tian, W., Chen, S., Beachy, R.N. and Fauquet, C.  (2001).  Comparative analysis of transgenic rice plants obtained by Agrobacterium-mediated transformation and particle bombardment.  Molecular Breeding, 7:25-33.

Fauquet, C.M. and Mayo, M.A. (2001).  The 7th ICTV Report.  Archives of Virology, 146:189-196.

Gandikota, M., de Kochko, A., Chen, L., Ithal, N., Fauquet, C., and Reddy, A.R. (2001). Development of transgenic rice plants expressing maize anthocyanin genes and increased blast resistance. Molecular Breeding, 7:73-83.

Masona, M.V., Taylor, N.J. , Robertson, A.I. and Fauquet, C.M. (2001). Transferring a cassava (Manihot esculenta Crantz) genetic engineering capability to the African environment:  Progress and prospects.  Euphytica, 120:43-48.

Ndjiondjop, M.N., Brugidou, C., Zang, S., Fargette, D., Ghesquiere, A. and Fauquet, C.M. (2001). High resistance to rice yellow mottle virus in two cultivated rice cultivars is correlated with failure of cell to cell movement. Physiological and Molecular Plant Pathology, 59: 309-316. Abstract Available.

Pita, J.S., Fondong, V.N., Sangaré, A., Kokora, R.N.N. and Fauquet, C.M. (2001).  Genomic and biological diversity of the African cassava geminiviruses.  Euphytica, 120:115-125.

Pita, J.S., Fondong, V.N., Sangaré, A., Otim-Nape, G.W., Ogwal, S. and Fauquet, C.M. (2001).  Recombination, pseudorecombination and synergism of geminiviruses are determinant keys to the epidemic of severe cassava mosaic disease in Uganda.  Journal of General Virology, 82: 655-665.

Taylor, N.J., Masona, M.V., Carcamo, R., Ho, T., Schôpke, C. and Fauquet, C.M. (2001).  Production of embryogenic tissues and regeneration of transgenic plants in cassava (Manihot esculenta Crantz).  Euphytica, 120:25-34.

Wu, J.D., Yang, J.B., Xu, C.W., Li, L., Xiang, T.H., Ni, D.F., Wang, X.F., Jia, S.R., Tang, Y.X., Zhang, S. and Fauquet, C.M. (2001).  Study on resistance gene to Bacterial Blight Xa21 transgenic rice and their hybrid combinations. Acta Agronomica Sinica, 27:29-34.

2000

Chatterji, A., Chatterji, U., Beachy, R.N. and Fauquet, C.M. (2000). Sequence parameters that determine specificity of binding of the replication-associated protein to its cognate in two strains of Tomato leaf curl virus-New Delhi. Virology, 273: 341-350.

Fauquet, C.M. and Pringle, C.R. (2000). Abbreviations for bacterial and fungal virus species names.  Archives of Virology, 145: 197-203.

Fauquet, C.M., Maxwell, D.P., Gronenborn, B. and Stanley, J. (2000).  Revised proposal for naming geminiviruses.  Archives of Virology, 145: 1743-1761.

Fondong, V., Pita, J.S., Rey, M.E.C., de Kochko, A., Beachy, R.N. and Fauquet, C.M. (2000). Evidence of synergism between African casava mosaic virus and the new double recombinant geminivirus infecting cassava in Cameroon. Journal of General Virology, 81: 287-297.

Fondong, V.N., Thresh, J.M. and Fauquet, C.M.  (2000).  Field experiments in Cameroon on cassava mosaic virus disease and the reversion phenomenon in susceptible and resistant cassava cultivars. International Journal of Pest Management, 46:211-217.

Mayo, M.A. and Fauquet, C.M. (2000).  The current composition of ICTV.  Archives of Virology, 145:1497-1504.

Opalka, N., Tihova, M., Brugidou, C., Kumar, A., Beachy, R.N., Fauquet, C.M., and Yeager, M. (2000). Structure of native and expanded sobemoviruses by electron cryo-microscopy and image reconstruction.Journal of Molecular Biology, 303: 197-211.

Qu, C., Liljas, L., Opalka, N., Brugidou, C., Yeager, M., Beachy, R.N., Fauquet, C.M., Johnson, J.E. and Tianwei, L. (2000).  3D domain swapping modulates the stability of members of an icosahedral virus group. Structure, 8:1095-1103.

Taylor, N.J. and Fauquet, C.M.  (2000).  Biotechnology’s Greatest Challenge.  Forum for Applied Research and Public Policy, 15: 51-58.

van Regenmortel, M.H.V., Mayo, M.A. and Fauquet, C.M. (2000).  Progrès en taxonomie virale.  Virologe, 4:29-37.

van Regenmortel, M.H.V., Mayo, M.A. and Fauquet, C.M. (2000). Virus nomenclature: consensus versus chaos. Archives of Virology, 145: 2227-2232.

1999

Chatterji, A., Padidam, M., Beachy, R.N. and Fauquet, C.M. (1999). Identification of replication specificity determinance in tomato leaf curl virus from New Delhi. Journal of Virology, 73: 5481-5489.

Fauquet, C.M. and Mayo, M.A. (1999). Abbreviations for plant virus names -1999.  Archives of Virology 144: 1249–1273.

Fauquet, C.M. and Pringle, C.R. (1999). Abbreviations for invertebrate virus species names. Archives of Virology 144:2265-2271.

Fauquet, C.M. and Pringle, C.R. (1999). Abbreviations for vertebrate virus species names. Archives of Virology 144:1865-1880.

Fishpool, L.D.C., Fauquet, C.M., Thouvenel, J.-C. and Burban, C. (1999). Sexual dimorphism in fourth instar nymphs of the whitefly Bemisia tabaci (Gennadius) (Homoptera: Aleyrodidae). Bulletin of Entomological Research.

Huet, H., Mahendra, S., Wang, J., Sivamani, E., Ong, C.A. , Chen, L., de Kochko, A., Beachy, R.N. and Fauquet, C.M. (1999). Near immunity to rice tungro spherical virus (RTSV) achieved in rice by replicase-mediated resistance strategy. Phytopathology, 89: 1022-1027.

Liu, D., Zhang, S., Fauquet, C.M. and Crawford, N.M. (1999). The Arabidopsis transposon Tag1 is active in rice, undergoing germinal transposition and restricted, late somatic excision. Molecular Gene Genetics, 262: 413-420.

Lizhen, Tao, Dinghou, Ling, Shiping, Zhang, Fauquet, C.M. (1999).  Gene transformation by particle bombardment in Indica rice and inheritance of the foreign gene in host rice plant.  Journal of Wuhan Botanical Research, 17: 289-296.

Marmey, P., Bothner, B., Jacquot, E., de Kochko, A., Ong, C. A., Yot, P., Siuzdak, R.N., Beachy, R.N. and Fauquet, C.M. (1999). Rice tungro bacilliform virus open reading frame 3 encodes a single 37 kDa coat protein. Virology, 253: 319 - 326.

Ndjiondjop, M.N., Albar, L., Fargette, D., Fauquet, C.M. and Ghesquierre, A. (1999).  The genetic basis of high resistance to rice yellow mottle virus (RYMV) in cultivars of two cultivated rice.  Plant Disease, 83: 931-935.

Padidam, M., Beachy, R.N. and Fauquet, C.M. (1999). A phage single-stranded DNA (ssDNA) binding protein complements ssDNA accumulation of a geminivirus and interferes with viral movement. Journal of Virology, 73: 1609-1616.

Padidam, M., Reddy, V.S., Beachy, R.N. and Fauquet, C.M. (1999). Molecular characterization of a plant mitochondrial chaperone GrpE. Plant Molecular Biology, 39: 871-888.

Padidam, M., Sawyer, S. and Fauquet, C.M. (1999). Possible emergence of new geminiviruses by frequent recombination. Virology, 265: 218-225.

Sangare, A., Deng, S., Fauquet, C.M. and Beachy, R.N. (1999). Resistance to African cassava mosaic virus conferred by a mutant of the putative NTP binding domain of the rep gene (AC1) in Nicotiana benthamiana. Molecular Breeding, 5: 95 - 102.

Schubert, J., Fauquet, C., Merits, A. and Rabenstein, F. (1999). The complete nucleotide sequence of the Ryegrass mosaic potyvirus indicates that it is a recombinant between members of two different genera in the family Potyviridae.  Journal of Plant Diseases and Protection, 106: 392-404.

Sivamani, E., Huet, H., Shen, P., Ong, C.A. , de Kochko, A., Fauquet, C.M. and Beachy, R.N. (1999). Rice plants (Oryza sativa L.) containing rice tungro spherical virus (RTSV) coat protein transgenes are resistant to virus infection. Molecular Breeding, 5: 177 - 185.

Tao L, Ling D., Zhang, S. and Fauquet, C.M. (1999). Gene transformation by particle bombardment in Indica rice and inheritance of the foreign gene in host rice plants. Journal of Wuhan Botanical Research 17: 289-296.

Taylor, N.J., Schöpke, C., Masona, M.V. and Fauquet, C.M. (1999). Development of genetic engineering technologies in cassava production. Biotechnology International, II: 268-275.

Zhang, S., Fan, Y.L. and Fauquet, C.M. (1999). The endosperm-specific expression of a rice prolamin chimeric gene in transgenic rice plants. Journal of Agricultural Biotechnology, 7.


 


Bio-Rice Project - Rice Tungro, RYMV, 1991 to 1998

Qu, R., Bhattacharyya, M., Laco, G. S., de Kochko, A., Rao, B. L. S., Kaniewska, M., Elmer, J. S., Rochester, D. E., Smith, C. E., & Beachy, R. N. (1991).
Complete sequence of rice tungro bacilliform virus DNA - Comparison with commelina yellow mottle virus and caulimoviruses. Virology(185): 354-364.
Li, L., Qu, R., Kochko de, A., Fauquet, C. M., & Beachy, R. N. (1993).
An improved rice transformation system using the biolistic method. Plant Cell Reports, 12: 250-255.
de Kochko, A., & Fauquet, C. M. (1994).
Du riz transgénique pour le tiers monde. ORSTOM Actualités, 1923.
de Kochko, A., Qu, R., Marmey, P., Rancé, I., Fauquet, C. M., & Beachy, R. N. (1994).
Protein slot blotting: an easy, rapid and reliable technique to identify the expression of a protein in transgenic plants. Plant Molecular Biology Reporter(12 (3)): 274-278.
Ngon A Yassi, M., Ritzenthaler, C., Brugidou, C., Fauquet, C. M., & Beachy, R. N. (1994).
Nucleotide sequence and genome characterization of rice yellow mottle virus RNA. Journal of General Virology(75): 249-257.
Rancé, I., Tian, W., Mathews, H., de Kochko, A., Beachy, R. N., & Fauquet, C. M. (1994).
Partial desiccation of mature embryo-derived calli, a simple treatment that dramatically enhances the regeneration ability of indica rice. Plant Cell Reports(13): 647-651.
Tian, W., Rancé, I., Sivamani, E., Fauquet, C. M., & Beachy, R. N. (1994).
Improvement of plant regeneration frequency in vitro in Indica rice. Chinese Journal of Genetics, 21(2): 105-112.
Tian, W., Rancé, I., Sivamani, E., Fauquet, C. M., & Beachy, R. N. (1994).
Improvement of plant regeneration frequency In vitro in indica Rice. Acta Genetica Sinica, 21(3): 215-221.
Brugidou, C., Holt, C., Ngon A Yassi, M., Zhang, S., Beachy, R. N., & Fauquet, C. M. (1995).
Synthesis of an infectious full-length cDNA clone of rice yellow mottle virus and mutagenesis of the coat protein. Virology, 206: 108-115.
Nguyen, H. H., Zhang, S., Chen, L., Marmey, P., Balasubramanian, P., Nguyen, V. U., Beachy, R. N., & Fauquet, C. M. (1995).
The first successful results on rice transformation of the Vietnamese aromatic variety Nang Huong Cho Dao using particle gun. Journal of Agriculture and Foodstuff Industry, 8: 292-293.
Song, W.-Y., Wang, G.-L., Chen, L., Kim, H.-S., Pi, L.-Y., Holsten, T., Gardner, J., Wang, B., Zhai, W.-X., Zhu, L.-H., Fauquet, C. M., & Ronald, P. (1995).
A receptor Kinase-like protein encoded by the rice disease resistance gene, Xa21. Science, 270: 1804-1806.
Brugidou, C., Bonneau, C., Ngon A Yassi, M., Holt, C., Beachy, R. N., & Fauquet, C. M. (1996).
An infectious full-length cDNA clone of Rice Yellow Mottle Virus (RYMV); a molecular tool for engineering virus resistance and developing a viral expression vector. Rice Yellow Mottle Virus in Africa ed, . Bouaké, Ivory Coast: WARDA.
Brugidou, C., Opalka, N., Bonneau, C., Cheng-Ming, C., Nicole, M., Yeager, M., Beachy, R. N., & Fauquet, C. M. (1996).
Histological studies of rice yellow mottle virus infection process in vivo. Rice Yellow Mottle Virus in Africa ed, . Bouaké, Ivory Coast: WARDA.
Fauquet, C. M., Brugidou, C., Kouassi, N., Bonneau, C., Ngon A Yassi, M., Opalka, N., Yeager, M., & Beachy, R. N. (1996).
Rice Yellow Mottle Virus: A threat to the African Farmer. RYMV in Africa ed, . Bouaké, Ivory Coast: WARDA.
Fauquet, C. M., Zhang, S., Chen, L., Marmey, P., de Kochko, A., & Beachy, R. N. (1996).
Biolistic transformation or rice: now efficient and routine for Japonica and Indica rices. Rice Genetics III - Proceedings of the Third International Rice Genetics Symposium ed, pp. 153-165. Manila, Philippines (16-20 October 1995): IRRI - Editor: G.S. Khush.
 
 
Kouassi, N., Brugidou, C., Chen, L., Ngon A Yassi, M., Beachy, R. N., & Fauquet, C. M. (1996).
Towards transgenic rice expressing the RYMV coat protein gene. Rice Yellow Mottle Virus in Africa (Proceedings of the International Symposium on RYMV) ed, . Bouaké, Ivory Coast: WARDA.
Opalka, N., Fauquet, C. M., Johnson, J., Beachy, R. N., & Yeager, M. (1996).
Three-dimensional structure of analysis of rice yellow mottle virus. Rice Yellow Mottle Virus in Africa ed, . Bouaké, Ivory Coast: WARDA Publication.
Qu, R., de Kochko, A., Zhang, L., Marmey, P., Li, L., Tian, W., Zhang, S., Fauquet, C. M., & Beachy, R. N. (1996).
Analysis of a large number of independent transgenic rice plants produced by the biolistic method. In vitro Cellular and Developmental Biology, 32(4): 233-240.
Ronald, P., Song, W.-Y., Wang, G. L., Chen, L. L., Kim, H.-S., Pi, L.-Y., Holsen, T., Wang, B., Williams, C., Zhai, W.-X., Zhu, L.-H., & Fauquet, C. M. (1996).
The rice disease resistance gene, Xa21, encodes a receptor kinase-like protein. Rice Genetics III - Proceedings of the Third International Rice Genetics Symposium ed, pp. 247-253. Manila, Philippines (16-20 October 1995): IRRI - Editor: G.S. Khush.
Sivamani, E., Shen, P., Ong, C. A., Hamidah, G., Hassan, G., Mohamed Senawi, M. T., Beachy, R. N., & Fauquet, C. M. (1996).
Biological screening and analysis of transgenic rice lines expressing coat protein gene(s) of rice tungro spherical virus. Rice Genetics III - Proceedings of the Third International Rice Genetics Symposium ed, pp. 768-772. Manila, Philippines (16-20 October 1995): IRRI - Editor: G.S. Khush.
Sivamani, E., Shen, P., Ong, C. A., Huet, H., Beachy, R. N., & Fauquet, C. M. (1996).
Pathogen derived resistance against the rice tungro spherical virus (RTSV) in transgenic rice engineered with the coat protein genes of RTSV. : In preparation.
Sivamani, E., Shen, P., Opalka, N., Beachy, R. N., & Fauquet, C. M. (1996).
Selection of large quantities of embryogenic subcultured calli from Indica rice seeds for production of fertile transgenic plants using the biolistic method. Plant Cell Reports, 15: 322-327.
Xie, M., Gu, H., Beachy, R. N., Fauquet, C. M., & Chen, Z. L. (1996).
Molecular cloning of a rice blast resistance gene and its genetic transformation. Rice Genetics III - Proceedings of the Third International Rice Genetics Symposium ed, pp. 681-688. Manila, Philippines (16-20 October 1995): IRRI - Editor: G.S. Khush.
Wen-Yuan Song, Guo-Liang Wang, Li-Li Chen, Han-Suk Kim, Li-Ya Pi, Tom Holsten, J. Gardner, Bei Wang, Wen-Xue Zhai, Li-Huang Zhu, Claude Fauquet, Pamela Ronald (1995).
A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science, 270: 1804-1806.
Zhang, S., Chen, L., Qu, R., Marmey, P., Beachy, R. N., & Fauquet, C. M. (1996).
Regeneration of fertile transgenic Indica (Group1) rice plants following microprojectile-transformation of embryogenic suspension culture cells. Plant Cell Reports, 15: 465-469.
 
Chen, L., Zhang, S., Beachy, R. N., & Fauquet, C. M. (1998).
A protocol for consistent, large-scale production of fertiletransgenic rice plants. Plant Cell Reports, 18:25-31.
 

International Cassava Trans Project [Return to top]

Fauquet, C. M., & Beachy, R. N. (1989). 
International Cassava-Trans Project. Cassava Viruses and Genetic Engineering. Paris,
France: CTA/ORSTOM. 
Franche, C., Bogusz, D., Fauquet, C., Schöpke, C., Jobe, C., Pease, J., & Beachy, R. N. (1990). 
A la frontière de la balistique
et de la biologie végétale: le canon à particules. ORSTOM Actualités, 29: 8-10.
Franche, C., Bogusz, D., Schöpke, C., Fauquet, C., & Beachy, R. N. (1991).
Transient gene expression in cassava using high
velocity microprojectiles. Plant Molecular Biology, 17: 493-498. 
Fauquet, C. M., Bogusz, D., Franche, C., Schöpke, C., Chavarriaga, P., & Beachy, R. N. (1992). 
Cassava Viruses and Genetic
Engineering. In: G. Thottapilly, L. M. Monti, D. R. Mohan Raj, & A. W. Moore (eds.) Biotechnology: Enhancing Research on
Tropical Crops in Africa, pp. 287-296. Ibadan, Nigeria: IITA/CTA. 
Mathews, H., Schöpke, C., Chavarriaga, P., Carcamo, R., Fauquet, C. M., & Beachy, R. N. (1993). 
Improvement of somatic embryogenesis and plant recovery in cassava. Plant Cell Reports, 12: 328-333. 
Schöpke, C., Franche, C., Bogusz, D., Chavarriaga, P., Fauquet, C. M., & Beachy, R. N. (1993). In: Bajaj Y. P. S. (ed.)
Transformation in Cassava (Manihot esculenta Crantz). Plant Protoplasts and Genetic Engineering IV., Vol. 23, pp. 273-289.
Springer-Verlag, Berlin. 
Calvert, L. A., Cuervo, M. I., Ospina, M. D., Fauquet, C. M., & Ramirez, B.-C. (1996). 
Characterization of cassava common
mosaic virus and a defective RNA species. Journal of General Virology, 77: 525-530. 
Schöpke, C., Taylor, N., Cárcamo, R., Konan, N. K., Marmey, P., Henshaw, G. G., Beachy, R. N., & Fauquet, C. M. (1996).
Regeneration of transgenic cassava plants (Manihot esculenta Crantz) from microbombarded embryogenic suspension cultures.
Nature Biotechnology, 14: 731-735. 
Verdaguer, B., de Kochko, A., Beachy, R. N., & Fauquet, C. M. (1996).
Isolation and expression in transgenic tobacco and rice
plants, of the cassava vein mosaic virus (CVMV) promoter. Plant Molecular Biology, 31: 1129-1139 
Thro, A. M., Beachy, R. N., Bonierbale, M., Fauquet, C. M., Henry, G., Henshaw, G. G., Hughes, M. A., Kawano, K.,
Raemakers, C. J. J. M., Roca, W., Schöpke, C., Taylor, N., & Visser, R. G. F. (1996). 
International research on biotechnology
of cassava (tapioca, Manihot esculenta Crantz) and its relevance to Southeast Asian economies. Asian Journal of Tropical
Biology, 2: 1-30. 
Konan, N. K., Schöpke, C., Càrcamo, R., Beachy, R. N., & Fauquet, C. M. (1997). 
An efficient mass propagation system for
cassava (Manihot esculenta Crantz) based on nodal explants and axillary bud-derived meristems. Plant Cell Reports, 16:
444-449. 
Schöpke, C., Taylor, N., Cárcamo, R., Beachy, R. N., & Fauquet, C. M. (1997). 
Mejora vegetal / las posibilidades de la yuca
transgénica. Investigación y Ciencia (Edición española de Scientific American): 35-36. 
Schöpke, C., Taylor, N., Cárcamo, R., Beachy, R. N., & Fauquet, C. M. (1997). 
Optimization of parameters for particle
bombardment of embryogenic suspension cultures of cassava (Manihot esculenta Crantz) using computer image analysis. Plant
Cell Reports, 16: 526-530. 
Fauquet C. M., Taylor N. J., Schöpke C., Cunnac S., Masona M. V. (1998)
Manioc et génie génétique: de nouveaux gènes pour
une culture vivriére millénaire. ORSTOM Actualités 55: 17-22 
de Kochko, A., Verdaguer, B., Taylor, N., Cárcamo, R., Beachy, R. N., & Fauquet, C. M. (1998). 
Cassava vein mosaic virus
(CsCMV), the type species for a new genus of double stranded DNA plant virus? Archives of Virology, 143(5): 945-962. 
Thro, A. M, Taylor, N. J., Raemakers, C. J. J. M., Puonti-Kaerlas, J., Schöpke, C., Visser, R. G. F., Iglesias, C., Sampaio, M.
J., Fauquet, C., Roca, W., Potrykus, I. (1998) 
Maintaining the Cassava Biotechnology Network. Nature Biotechnology, 16:
428-430 
Verdaguer, B., Fux, C., de Kochko, A., Beachy, R. N., & Fauquet, C. M. (1998). 
Functional analysis of the CsVMV promoter.
Plant Molecular Biology (in press) 
González, A. E., Schöpke, C., Taylor, N., Beachy, R. N., Fauquet, C. M. (1998) 
Regeneration of transgenic cassava plants
(Manihot esculenta Crantz) through Agrobacterium-mediated transformation of embryogenic suspension cultures. Plant Cell
Reports (in press). 

Other Publications by ILTAB Members
Schöpke, C. (1996) 
Regeneration from coffee protoplasts. In: Bajaj Y. P. S. (ed.) Biotechnology in Agriculture and Forestry Vol.
38: Plant Protoplasts and Genetic Engineering VII. Springer Verlag, Berlin, pp 21-32 
Taylor, N. J., Fauquet, C.M. (1997) 
Transfer of rice and cassava gene biotechnologies to developing countries. Biotechnology
International 1: 239-246 
Taylor N. J., Beachy R. N., Fauquet C. M. (1997)
Developing plant gene techniques for food security in Developing Countries.
In: Jordan C. et al. (eds.) Global aid. Hanson and Cooke, London, pp 87-90 
Schöpke, C., Fauquet, C. (1998) 
Particle bombardment as a means of DNA transfer into plant cells. In: Lacey, A. (ed.) Light
Microscopy in Biology - a practical approach 2nd ed. Oxford University Press.

Tomato Project - Geminivirus [Return to top]

Rochester, D. E., Beachy, R. N., & Fauquet, C. M. (1993).
Geminivirus nomenclature: we need to set a standard. Archives of Virology(132): 221-223.
Rochester, D. E., De Paulo, J., Fauquet, C. M., & Beachy, R. N. (1994).
Complete nucleotide sequence of the geminivirus tomato yellow leaf curl virus, Thailand isolate. Journal of General Virology(75): 477-485.
Padidam, M., Beachy, R. N., & Fauquet, C. M. (1995a).
Classification and identification of geminiviruses using sequence comparisons. Journal of General Virology, 76: 249-263.
Padidam, M., Beachy, R. N., & Fauquet, C. M. (1995b).
Tomato leaf curl geminivirus from India has a bipartite genome and coat protein is not essential for infectivity. Journal of General Virology, 76: 25-35.
 
Padidam, M., Beachy, R. N., & Fauquet, C. M. (1996).
The role of AV2 ("precoat") and coat protein in viral replication and movement in tomato leaf curl geminivirus. Virology, 224: 390-404.
 
 
Umaharan, P., Padidam, M., Beachy, R. N., & Fauquet, C. M. (1997).
Distribution and diversity of geminiviruses in Trinidad and Tobago. Phytopathology, 88:1262-1268.

Potyvirus, Sugarcane, Yam [Return to top]

Aleman, M.-E., Marcos, J. F., Brugidou, C., Beachy, R. N., & Fauquet, C. M. (1996).
The complete nucleotide sequence of yam mosaic virus (Ivory Coast isolate) genomic RNA. Archives of Virology, 141: 1259-1278.
Aleman-Verdaguer, M.-E., Goudou-Urbino, C., Dubern, J., & Fauquet, C. M. (1997).
Analysis of the sequence diversity in the P1, HC, P3, NIb and CP genomic regions of several yam mosaic potyvirus isolates: implications for the intraspecies molecular diversity of potyviruses. Journal of General Virology, 78:1253-1264.
 
 
 

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