#NEXUS [!Alignment of:] [Sequence Start End Sequencetype] [RANDOM (1 > 2760) DNA ] [MSV-RE[N2AR3] (1 > 2685) DNA ] [MSV-RE[N2AR4] (1 > 2685) DNA ] [MSV-RE[N2AR6] (1 > 2685) DNA ] [MSV-RE[N2AR2] (1 > 2685) DNA ] [MSV-RE[N2AR5] (1 > 2685) DNA ] [MSV-RE[N2AR8] (1 > 2685) DNA ] [MSV-RE[SP1R10] (1 > 2685) DNA ] [MSV-RE[SP2R13] (1 > 2685) DNA ] [MSV-RE[SP2R11] (1 > 2685) DNA ] [MSV-RE[SP2R7] (1 > 2685) DNA ] [MSV-RE[SP2R12] (1 > 2685) DNA ] [MSV-KE[SA] (1 > 2690) DNA ] [MSV-KE[Kom] (1 > 2699) DNA ] [MSV-KE (1 > 2681) DNA ] [MSV-KE[NG] (1 > 2687) DNA ] [SetSV (1 > 2701) DNA ] [SSEV-[BS] (1 > 2707) DNA ] [SSEV-[Giz] (1 > 2706) DNA ] [SSEV-[Man] (1 > 2704) DNA ] [SSEV-[Asw] (1 > 2707) DNA ] [SSV-ZA (1 > 2758) DNA ] [SSREV (1 > 2735) DNA ] [PanSV-KE (1 > 2700) DNA ] [PanSV-Kar (1 > 2705) DNA ] [DSV (1 > 2701) DNA ] [CSMV (1 > 2750) DNA ] [WDV-[SE] (1 > 2749) DNA ] [WDV-[FR] (1 > 2750) DNA ] [WDV-[CZ] (1 > 2750) DNA ] [TYDV (1 > 2580) DNA ] [BeYDV (1 > 2561) DNA ] [MiSV-[JP] (1 > 2672) DNA ] [MiSV (1 > 2672) DNA ] begin data; dimensions ntax=34 nchar=2938; format datatype=DNA interleave gap=- missing='.'; matrix [ 1 60] RANDOM -GATACTGCCCGGAGAAGACCTCAATATTTAGTATTCAGAGAAGTAAAGCAGAAAGCAGG MSV-RE[N2AR3] TAATATTAC--CGCGCCTTCTTTTCCTGCGAGGTCCCGGTAGGGAC--CGAGCGA-TTTG MSV-RE[N2AR4] TAATATTAC--CGCGCCTTCTTTTCCTGCGAGGTCCCGGTAGGGAC--CGAGCGA-TTTG MSV-RE[N2AR6] TAATATTAC--CGCGCCTTCTTTTCCTGCGAGGTCCCGGTAGGGAC--CGAGCGA-TTTG MSV-RE[N2AR2] TAATATTAC--CGCGCCTTCTTTTCCTGCGAGGTCCCGGTAGGGAC--CGAGCGA-TTTG MSV-RE[N2AR5] TAATATTAC--CGCGCCTTCTTTTCCTGCGAGGTCCCGGTAGGGAC--CGAGCGA-TTTG MSV-RE[N2AR8] TAATATTAC--CGCGCCTTCTTTTCCTGCGAGGTCCCGGTAGGGAC--CGAGCGA-TTTG MSV-RE[SP1R10] TAATATTAC--CGCGCCTTCTTTTCCTGCGAGGTCCCGGTAGGGAC--CGAGCGA-TTTG MSV-RE[SP2R13] TAATATTAC--CGCGCCTTCTTTTCCTGCGAGGTCCCGGTAGGGAC--CGAGCGA-TTTG MSV-RE[SP2R11] TAATATTAC--CGCGCCTTCTTTTCCTGCGAGGTCCCGGTAGGGAC--CGAGCGA-TTTG MSV-RE[SP2R7] TAATATTAC--CGCGCCTTCTTTTCCTGCGAGGTCCCGGTAGGGAC--CGAGCGA-TTTG MSV-RE[SP2R12] TAATATTAC--CGCGCCTTCTTTTCCTGCGAGGTCCCGGTAGGGAC--CTAGCGC-TTTG MSV-KE[SA] TAATATTAC--CGCGCCTTCTTTTCCTGCGAGGGCCCGGTAGGGAC--CGAGCGC-TTTG MSV-KE[Kom] TAATATTACACCGCGCCTTCTTTTCCTGCGAGGGCCCGGTAGGGAC--CGAGCGC-TTTG MSV-KE TAATATTA--CCGCGCCTTCTTTTCCTGCG--------GTAGGGCC--CGAGCGA-TTTG MSV-KE[NG] TAATATTA--CCGCGCCTTCTTTTCCTGCGAGGGCCCGGTAGGGCC--CGAGCGA-TTTG SetSV TAATATTA--CCTCGCCCCCTTTACCTGCGAGGGCCCGGTAGGGAC--CGAGCGTCTTTG SSEV-[BS] TAATATTAC----CGCGCTC-TCTCATGCGAGGCCCA--CCAGG-C--CGAGCGG-TCC- SSEV-[Giz] TAATATTAC----CGCGCTC-TCTCATGCGAGGCCCA--CCAGG-C--CGAGCGG-TCC- SSEV-[Man] TAATATTAC----CGCGCTC-TCTCATGCGAGGCCCA--CCAGG-C--CGAGCGG-TCC- SSEV-[Asw] TAATATTAC----CGCGCTC-TCTCATGCGAGGCCCA--CCAGGGC--CGAGCGG-TCC- SSV-ZA TAATATTAC----AGCGCTT-TTTCATGCGAGGCCCA--CCAGGCC---GACGGG-TCC- SSREV TAATATTAC----CGCGCTT-TCTCATGCGAG-CCCG--TTAGGGC---GAGCGG-TCC- PanSV-KE TAATATTAC----CGCTCACACCCCATGCGAGCCGCGGCTCTGTGCGGCGAGCGG-TCC- PanSV-Kar TAATATTAC----CGCTCACACCCCATGCGAGCCACGGCCCTGTGTGGCGAGCGG-TCC- DSV TAATATTAC----AGC-CCCACCCCCTGCGAGCCCT---TTAG---GGCGAGCGA-TTTG CSMV TAATATTAC--CGCCCCCCCGGCCCATGCGAGGGCCC---ATGCTCAACG---GGTCCCG WDV-[SE] TAATATTACCCCGCGTGGTGGCCCCCGACGCGCACTCGGCTT--TTCGTGAGTG-C-GCG WDV-[FR] TAATATTACCCCGCGTGGTGGCCCCCGACGCGCACTCGGCTT--TTCGTGAGTG-CCGCG WDV-[CZ] TAATATTACCCCGCGTGGTGGCCCCCGACGCGCACTCGGCTT--TTCGTGAGTG-C-GCG TYDV TAATATTACCC-GTGAGT-----------GCTCTCTTGGCCC--CACGCGAGCC-CTTTA BeYDV TAATATTACCG-GCGTGG-----------CCCCACCTTATC------GCGAGTG-CTTTA MiSV-[JP] TAATATTACCGCTCCCCCT--CCCTGGCCCATTAGTAGGCCC--CATGCCT-CG-GTGCG MiSV TAATATTACCGCTCCCCCT--CCCTGGCCCATTAGTAGGCCC--CTTGCCT-CG-GTGCG [ 61 120] RANDOM ATTCTGCCCGGAGAAGGAAGCTCACATTAGT------GAAGC--TCTTTTCACATTGAGG MSV-RE[N2AR3] ATTTAAAGCTTGGTCCTGCTTT-GT-ATGATTTATCGAAAGCAGCCTA-ATCTAAAGAAT MSV-RE[N2AR4] ATTTAAAGCTTGGTCCTGCTTT-GT-ATGATTTATCGAAAGCAGCCTA-ATCTAAAGAAT MSV-RE[N2AR6] ATTTAAAGCTTGGTCCTGCTTT-GT-ATGATTTATCGAAAGCAGCCTA-ATCTAAAGAAT MSV-RE[N2AR2] ATTTAAAGCTTGGTCCTGCTTT-GT-ATGATTTATCGAAAGCAGCCTA-ATCTAAAGAAT MSV-RE[N2AR5] ATTTAAAGCTTGGTCCTGCTTT-GT-ATGATTTATCGAAAGCAGCCTA-ATCTAAAGAAT MSV-RE[N2AR8] ATTTAAAGCTTGGTCCTGCTTT-GT-ATGATTTATCGAAAGCAGCCTA-ATCTAAAGAAT MSV-RE[SP1R10] ATTTAAAGCTTGGTCCTGCTTT-GT-ATGATTTATCTAAAGCAGCCTA-ATCTAAAGAAT MSV-RE[SP2R13] ATTTAAAGCTTGGTCCTGCTTT-GT-ATGATTTATCTAAAGCAGCCTA-ATCTAAAGAAT MSV-RE[SP2R11] ATTTAAAGCTTGGTCCTGCTTT-GT-ATGATTTATCTAAAGCAGCCTA-ATCTAAAGAAT MSV-RE[SP2R7] ATTTAAAGCTTGGTCCTGCTTT-GT-ATGATTTATCTAAAGCAGCCTA-ATCTAAAGAAT MSV-RE[SP2R12] ATTTAAAGCTTGGTCCTGCTTT-GT-ATGATTTATCTAAAGCAGCCTA-ATCTAAAGAAT MSV-KE[SA] ATTTAAAGCCTGGTTCTGCTTT-GT-ATGATTTATCTAAAGCAGCCCA-ATCTAAAGAAA MSV-KE[Kom] ATTTAAAGCCTGGTTCTGCTTT-GT-ATGATTTATCTAAAGCAGCCCA-ATCTAAAGAAA MSV-KE ATGTAAAGCTTGGTCCTGCTTT-GT-ATGATTTATCTAAAGCAGCCCA-TTCTAAAGAAA MSV-KE[NG] ATGTAAAGTTTGGTCCTGCTTT-GT-ATGATTTATCTAAAGCAGCCCA-TTCTAAAGAAT SetSV ATTTAAAGCTCAGATTTGCTTTTGTCGTGAAATATC-AAAGCTGCCTT-GTTTAAAGAAG SSEV-[BS] -T----GCTTTGGG-GCCCTAT-GTC-T--TTCGTT---AA-AGCCTGTATGTAATTAGG SSEV-[Giz] -C----GCTTTGGG-GCCCTAT-GTC-T--TTCGTT---AA-AGCCTGTATGTAGTAAGG SSEV-[Man] -T----GCTTTGGG-GCCCTAT-GTC-T--TTCGTT---AA-AGCCTGTATGTAATTAGG SSEV-[Asw] -T----GCTTTGGG-GCCCTAT-GTC-T--TTCGTT---AA-AGCCTGTATGTAATAAGG SSV-ZA -C---GGTTCTGGGTGCGTTTT-GTT-C--TTTATT---GCCGGCT---GCTTTGAAACG SSREV -CCTAGGCTTTAGGAGAGCTT--GTT-T--TTCTCA---GTCGGCCCCGATATTAAAGGG PanSV-KE -CCGGATGTTTTACCCCCCGGT-GCGAT--TTCTTT---AGCTGCGTGTTCTTTAGCA-G PanSV-Kar -CCGGATGTTCT-TACCCCGGT-GCGAT--TTCTTT---AGCTGCGTGTTCTTTAGCA-G DSV ATTTAAAGTAAGGAGGGGGAAA-CAAAG--TGCCCC---GACAGA------ATAAAAAGC CSMV AGC--GGCTTTGGCTTTCACATGGGCTTGTCCCCCGCGATGCGATCTGC-TCTG------ WDV-[SE] ---GAGGCTTTTGGACCACATCTTTTCTGAT-CACTTTC-GTGGAAGATGTTGATTTATC WDV-[FR] ---GAGGCTTTTGGACCACATCTTTTCTGAT-CACTTTC-GTGGAATATGTTGATTTATC WDV-[CZ] ---GAGGCTTTTGGACCACATCTTTTCTGAC-CACTTTC-GTGGAATATGTTGATTTATC TYDV ---G-GGCGAGCGA---AAGTGCGCCGTAGT-TTCCTTTAGTGGTTCATGAGTCATTATA BeYDV ---G-CACGAGCGGTCCAGATTTAAAGTAGA-AAAGTTC--CCGCCCACTAGGGTTAAAG MiSV-[JP] --CGGCGCCTTTGGTCCCCGTTCCTT---GC-CGCCTTTGGCAGAAGAT-CGCACTCAGG MiSV --CTGCGCCTTTGGTCCCCGTTCCTT---GC-CGCCTTTGGCAGAAGAT-CGCACTCAGG [ 121 180] RANDOM TCGTGTACTGTTCGTTTTTTAACCCACGTCCCAAATTTTTCCGTTGGAACTCTTCGAGAT MSV-RE[N2AR3] CCGGTCCCGG---GCACTATAAATT--GTCTAACAA-GTGCGATTC-ACTCATGGAT--C MSV-RE[N2AR4] CCGGTCCCGG---GCACTATAAATT--GTCTAACAA-GTGCGATTC-ACTCATGGAT--C MSV-RE[N2AR6] CCGGTCCCGG---GCACTATAAATT--GTCTAACAA-GTGCGATTC-ACTCATGGAT--C MSV-RE[N2AR2] CCGGTCCCGG---GCACTATAAATT--GTCTAACAA-GTGCGATTC-ACTCATGGAT--C MSV-RE[N2AR5] CCGGTCCCGG---GCACTATAAATT--GTCTAACAA-GTGCGATTC-ACTCATGGAT--C MSV-RE[N2AR8] CCGGTCCCGG---GCACTATAAATT--GTCTAACAA-GTGCGATTC-ACTCATGGAT--C MSV-RE[SP1R10] CCGGTCCCGG---GCACTATAAATT--GTCTAACAA-GTGCGATTC-ACTCATGGAT--C MSV-RE[SP2R13] CCGGTCCCGG---GCACTATAAATT--GTCTAACAA-GTGCGATTC-ACTCATGGAT--C MSV-RE[SP2R11] CCGGTCCCGG---GCACTATAAATT--GTCTAACAA-GTGCGATTC-ACTCATGGAT--C MSV-RE[SP2R7] CCGGTCCCGG---GCACTATAAATT--GTCTAACAA-GTTCGATTC-ACTCATGGAT--C MSV-RE[SP2R12] CCGGTCCCGG---GCACTATAAATT--GTCTAACAA-GTGCGATTC-ACTCATGGAT--C MSV-KE[SA] CCGGTCCCGG---GCACTATAAATT--GCCTAACAA-GTGCGATTC-ATTCATGGAT--C MSV-KE[Kom] CCGGTCCCGG---GCACTATAAATT--GCCTAACAA-GTGCGATTC-ATTCATGGAT--C MSV-KE CCGGTCCCGG---GCACTATAAATT--GCCTAACAA-GTGCGATTC-ATTCATGGAT--C MSV-KE[NG] CCGGTCCCGG---TCACTATAAATT--GCCTAACAA-GTGCGATTC-ATTCATGGAT--C SetSV CCGTCCCACG---CGACTATAAATT--GTCTCACAA-GTGCGATTC-AGCCATGGAT--C SSEV-[BS] C--GCTTTGGATCGCA-TATAAGTTC-GTGC-CCAG-GCTCAGTGG-TGCTATGGACGGC SSEV-[Giz] C--GCTTTGGATCGCA-TATAAGTTC-GTGC-CCAG-GCTCAGTGG-TGCTATGGACGGC SSEV-[Man] C--GCTTTGGATCGCA-TATAAGTTC-GTGC-CCAG-GCTCAGTGG-TGCTATGGACGGC SSEV-[Asw] C--GCTTTGGATCGCA-TATAAGTTC-GTGC-CCAG-GCTCAGTGG-TGCTATGGACGGC SSV-ZA CCGGCTTTGGATCGCACTATAAG-GG-GGTT-GT-G-TCATGTGTT-CGACATGGATAGC SSREV CCGCGTATGAATCGCACTATAAGTAG-AGCC-CTAG-GTGCGATCT-CTGCATGGATAGC PanSV-KE CTGCCCCC--ACTGTCCTATAAGATG-CTCT-CCCG-GGGCGATTC-CG-CATCATGGAT PanSV-Kar CTGCCCCC--ACTGTCCTATAAGTTG-CTC--CCCG-GTGCGATTC-CG-CATCATGGAT DSV CCGCACCCAG--CG-GCTATAAATCA-GCTCAGCTA-TTGCGATCC-TTACATGGA--GT CSMV CCATGCTTTGGCGGCTTTATAAAGCC-GTTCTCAGA-CCTTTGTTT-TCCAATGCAGTAC WDV-[SE] ACACT-TTTGACGGGGAAATCTGTGCCATGCCTTAGCTTATAAGGA-AGTG-CGTGGTAG WDV-[FR] ACACT-TTGGACGTGGAAATGTGTGCCATGCCTTAGCTTATA-GGA-AGTG-CGTGGGAG WDV-[CZ] ACACT-TTTGACGCGGAAATCTGTGCCATGCCTTAGCTTATAAGGA-AGTG-CGTGGTAG TYDV GTGCT--ATA-TAAAGATG-ATGTGACATCCCAAAGTTGAAAATGT-ATCC-CGCCAAAT BeYDV GTGTT-CACACTATAAAAGCATATACGATGTGATGGTATTTGATGG-AGCG-TATATTGT MiSV-[JP] CTGCTGTAAAATGGCACCGCCATTTGAGTGTTTTTGCTTTGGTGCC-TTTGGTTTGCGGC MiSV CTGCTGTAAAATGGCACCGCCATTTGAGTGTTTTTGCTTTGGTGCC-TTTGGTTTGCGGC [ 181 240] RANDOM CTTTTTGCTGAATAAGATGTGCTAACTAATAGAAAACCCATAAGCCCCGGCCTTTACGGG MSV-RE[N2AR3] CACAGAA-----TTCCTTGTAT-------------GTACAGCCGCG--GGTACCCACAGC MSV-RE[N2AR4] CACAGAA-----TTCCTTGTAT-------------GTACAGCCGCG--GGTACCCACAGC MSV-RE[N2AR6] CACAGAA-----TTCCTTGTAT-------------GTACAGCCGCG--GGTACCCACAGC MSV-RE[N2AR2] CACAGAA-----TTCCTTGTAT-------------GTACAGCCGCG--GTTACCCACAGC MSV-RE[N2AR5] CACAGAA-----TTCCTTGTAT-------------GTACAGCCGCG--GGTACCCACAGC MSV-RE[N2AR8] CACAGAA-----TTCCTTGTAT-------------GTACAGCCGCG--GGTACCCACAGC MSV-RE[SP1R10] CACAGAA-----CTCCTTGTAT-------------GTACAGCCGCG--GGTACCCACAGC MSV-RE[SP2R13] CACAGAA-----CTCCTTGTAT-------------GTACAGCCGCG--GGTACCCACAGC MSV-RE[SP2R11] CACAGAA-----CTCCTTGTAT-------------GTACAGCCGCG--GGTACCCACAGC MSV-RE[SP2R7] CACAGAA-----CTCCTTGTAT-------------GTACAGCCGCG--GGTACCCACAGC MSV-RE[SP2R12] CACAGAA-----CTCCTTGTAT-------------GTACAGCCGCG--GGTACCCACAGC MSV-KE[SA] CACAGAA-----CGCCCTGTAT-------------TATCAGCCGCG--GGTACCCACTGC MSV-KE[Kom] CACAGAA-----CGCCCTGTAT-------------TATCAGCCGCG--GGTACCCACAGC MSV-KE CACAGAA-----CGCCCTGTAT-------------TATCAGCCGCG--GGTACCCACAGC MSV-KE[NG] CACAGAA-----CGCCCTGTAT-------------TATCAGCCGCG--GGTACCCACAGC SetSV CTCAGAG-----TGCTATCTAT-------------ACTCTCCCACG--GGTACCCACAGC SSEV-[BS] TCTGGAGGAGCGTTGCCTGCTTT-GCCT-CAAAGTGTTCTGCCGCG--GGTACCCTCGCC SSEV-[Giz] TCTGGAGGAGCGTTGCCTGCTTT-GCCT-CAAAGTGTTCTGCCGCG--GGTACCCTCGCC SSEV-[Man] TCTGGAGGAGCGTTGCCTGCTTT-GCCT-CAAAGTGTTCTGCCGCG--GGTACCCTCGCC SSEV-[Asw] TCTGGAGGAGCGTTGCCTGCTTT-GCCT-CAAAGTGTTCTGCCGCG--GGTACCCTCGCC SSV-ZA TTTGGCAGAGCTCCTCCT-CTTT-GGCCGCAGTCAGCTTTGCCTCG--GGTCCCTGGTGC SSREV CTTGAAGGAGCGTCCCCTGCTTT-GCCCGCAGT-AGCTTTGCCTCG--TGTCCCCCGGGC PanSV-KE GCTAGCAGCCAGTACTCTGCTTT-GCCT-TATCCTCAGCCCCCGCG--GGTACCCTCTGC PanSV-Kar GCTAGCAGC-ACCACTC--CTTT-TCCT-TTCCCTCAGCCGCCTCG--GGTACCCTCTGC DSV GGTACCAGAGTG------ACACT-G---GCAATCAAAA--GCCTCA--AAGTCCCACGCA CSMV CAGGGGTACGAGCAGCTCAGTAG-ATCTG-GATCCGTGGAGCAACCC-AGCCCCGGTGCT WDV-[SE] CCCATCTCGATGGAGCAGGCAATAGCCCCCCCGCTTCCTATACGGG--ACTA-T-----C WDV-[FR] CCCATGTCGATGGAGCAGGCAATCGCCCCCCCGCTTCCTATACGGG--ACTA-T-----C WDV-[CZ] CCCATCTCGATGGAGCAGGCAATAGCCCCCCCGCTTCCTATACGGG--ACTA-T-----C TYDV ACCAAGTGGTCCCATCTGGTATAAATTACTCAGATACCCCTGTTGGT-ACTT-TTGAG-C BeYDV ATCAGGTATTTCCGTCGGATACGAATTATTCGTACGACCCT--------CCT-----G-C MiSV-[JP] TTTAAAAAGAGGCGGAGGCTCAGAGATCGCACCAAAACCAAAGGTAC-GCAGGTTGCT-T MiSV TTTAAAAAGAGGCGGAGGCTCAGAGATCGCACCAAAACCAAAGGTAC-GCAGGTTGCT-T [ 241 300] RANDOM CCCATGGGTGAACGGCCTTAACCTTTAGGTCTGCGATTATAACTTCCCTCTATTGAAAAT MSV-RE[N2AR3] AGCTCCGACCTCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-RE[N2AR4] AGCTCCGACCTCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-RE[N2AR6] AGCTCCGACCTCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-RE[N2AR2] AGCTCCGACCTCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-RE[N2AR5] AGCTCCGACCTCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-RE[N2AR8] AGCTCCGACCTCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-RE[SP1R10] AGCTCCGACCTCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-RE[SP2R13] AGCTCCGACCTCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-RE[SP2R11] AGCTCCGACCTCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-RE[SP2R7] AGCTCCGACCTCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-RE[SP2R12] AGCTCCGACCTCCGCAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-KE[SA] AGCTCCGACATCCGGAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-KE[Kom] AGCTCCGACATCCGGAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-KE AGCTCCGACATCCGGAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C MSV-KE[NG] AGCTCCGACATCCGGAGGAGTGCCGTGGAGTCGCGTAGGCGAGGTAGCTATT-TTGAG-C SetSV AGCTCCGACCACCGGAGGTGTGTCGTGGAGTCACGTCGGCGAGGTAGCTATA-CTGAG-C SSEV-[BS] ACCTCCGTCTGCCGGAGTGCTGCCGTGGAGTCGCGTCGGTGAGATATTGATT-TTCAC-C SSEV-[Giz] ACCTCCGTCTGCCGGAGTGCTGCCGTGGAGTCGCGTCGGTGAGATAGTGATT-TTCAC-C SSEV-[Man] ACCTCCGTCTGCCGGAGTGCTGCCGTGGAGTCGCGTCGGTGAGATAGTGAAT-TTCAC-C SSEV-[Asw] ACCTCCGTCTGCCGGAGTGCTGCCGTGGAGTCGCGTCGGTGAGATAGTGATT-TTCAC-C SSV-ZA TGCTCCGTCGTCCTCTGGACTGCCGTGGAGCCGCGTCGGTGAGATAGCTATC-TTTAC-C SSREV AGCTCCGTCCGCTCCTGCGTTGCCGTGGAGCCGCGTTGGTGAAATAGCTATC-TTTAC-C PanSV-KE AGCTCCGTCCGCCGGACGGCTGCCGTGGAGTCGCGTCGGTGAGATAGTCATC-TTTAC-C PanSV-Kar AGCTCCGGTCGCCGGAGCGCTGCCGTGGAGTCGCGTCGGTGAGATAGTTATC-TTTAC-C DSV AGCTCCGTCT---------TTGCCGTGGAGTCGTCTCGGTGAGATAGCTATA-TTGAC-A CSMV AGCTTTGCTTTCCCGGTGAAGGTGACAGC-CCTCGTCTGTTTCGCAGCGATTGTTGGA-G WDV-[SE] AATACCAGACCCCTTCCATTCCCGGTTCCTCCGACTACG---CCTGGCGAACATTTGT-G WDV-[FR] AATACCAGACCCCTTCCAATCCCGGTTCCTCCGACTACG---CCTGGCGAACATTTGT-G WDV-[CZ] AATACCAGACCCCTTCCATTCCCGGTTCCTCCGACTACG---CCTGGCGAACATTTGT-G TYDV AATATCAGCCGCAGAAAGCGGGTGAGTCATCGGAGCACT---TCTTTTCGAAAGTTGT-T BeYDV AGTAACTGCTCCTTCACA-GGGTTCATCTCAAACGGATT---TCGGT---AAGGTTGT-T MiSV-[JP] GTCTTCGAACTTGGGTCATTAAGTTTTGCTTCGTTTGTAAGTTTTTATGGATCCCTAT-G MiSV GTCTTCGAACTTGGGTCATTAAGTTTTGCTTCGTTTGTAAGTTTTTATGGATCCCTAT-G [ 301 360] RANDOM CCCACCACATTAGTGAAGCTCTTTTCACATTGAGGTCGTGGGCCCATGGGTGAACGGCCT MSV-RE[N2AR3] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-RE[N2AR4] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-RE[N2AR6] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-RE[N2AR2] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-RE[N2AR5] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-RE[N2AR8] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-RE[SP1R10] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-RE[SP2R13] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-RE[SP2R11] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-RE[SP2R7] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-RE[SP2R12] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-KE[SA] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-KE[Kom] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-KE TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT MSV-KE[NG] TTTGTTGCATTGATTTGCTTTTACCTGCTTTACCTTTGGGTGCTGAGAGACC--TTATCT SetSV TTTGTTGCTTTGATTTGCATTTATCTGCTTTACCTTTGGGTGTTGAGAGACC--TTATCT SSEV-[BS] TTTGTTGCTTTGGTAGCTCTGTACCTGTTATGGTTGTGGGTGCTGAGAGATC--TTATCT SSEV-[Giz] TTTGTTGCTTTGGTAGCTCTGTACCTGTTATGGTTGTGGGTGCTGAGAGATC--TTATCT SSEV-[Man] TTTGTTGCTTTAGTAGCTCTGTACCTGTTATGGTTGTGGGTGCTGAGAGATC--TTATCT SSEV-[Asw] TTTGTTGCTTTGATAGCTTTGTACCTGTTATGGTTGTGGGTGCTGAGAGATC--TTATCT SSV-ZA TTTGTTGCAGTATTGGCGCTTTACCTGCTCTGGAGTTGGGTGGGTAGAGATC--TTCTCT SSREV TTTGTTGCAGTGCTAGCGCTTTACTTACTTTGGGTTTGGGTGCTGAGAGATC--TTGTCT PanSV-KE TTTGTTTCAGTGCTAGCTCTTTACCTGCTTTGGCTTTGGGTGCTCAAAGATT--GTATCT PanSV-Kar TTTGTTTCAGTGCTAGGCCTTTACCTGCTTTGGCTTTGGGTGCTCAAAGATT--GTATCT DSV CTATTAGCAGTGCTTTGCATTTACCTGCTTTACATTTGGGTGCTGAGAGATC--TTATCT CSMV CCTGTATTCTTG-TATTCTTGTACAAGACGTG-CATTGCGGACTGCATAACG--CAGTAC WDV-[SE] TTCGTTACCTTTGGTT-TGCTAATAGCCGTAGGCGTTGCTTGGCTTGC--TT--ACACTC WDV-[FR] TTCGTTACCTTCGGTT-TGCTAATAGCCGTAGGCGTTGCTTGGCTTGC--TT--ACACTC WDV-[CZ] TTCGTTACCTTCGGTT-TGCTAATAGCCGTAGGCGTTGCTTGGCTTGC--TT--ACACTC TYDV GTTGCTTTGATTGTTA-TCCTTTTTGCTGTAGGTATCGTATACTTAGC--GT--ATACGT BeYDV ATTGCTTTGGTGGTTA-TCTTGGTCAGCGTAGGTGTTTTCTATCTGGC--CT--ATACCT MiSV-[JP] GTAGCCGTCCTAGCCA-TCCTGATGATGGT--GCACTGCATGGTATAC--TT--GTGGCA MiSV GTAGCCGTCCTAGCCA-TCCTGATGATGGT--GCACTGCATGGTATAC--TT--GTGGCA [ 361 420] RANDOM TAACCTTTAGGTCTATTGAGGTCGTGGTTCGCTATGTTTATTACACTTGG-ATTGGAAGG MSV-RE[N2AR3] TAGTTCTGAAGGCTCGCCAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG MSV-RE[N2AR4] TAGTTCTGAAGGCTCGCCAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG MSV-RE[N2AR6] TAGTTCTGAAGGCTCGCCAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG MSV-RE[N2AR2] TAGTTCTGAAGGCTCGCCAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG MSV-RE[N2AR5] TAGTTCTGAAGGCTCGCCAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG MSV-RE[N2AR8] TAGTTCTGAAGGCTCGCCAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG MSV-RE[SP1R10] TAGTTCTGAAGGCTCGCCAAGGCA-GATCCACGGAGGAGATGATATTTGGTG--GACAAG MSV-RE[SP2R13] TAGTGCTGAAGGCTCGCCAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG MSV-RE[SP2R11] TAGTTCTGAAGGCTCGCCAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG MSV-RE[SP2R7] TAGTTCTGAAGGCTCGCCAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG MSV-RE[SP2R12] TAGTTCTGAAGGCTCGCCAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG MSV-KE[SA] TAGTTCTGAAGGCTCGACAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG MSV-KE[Kom] TAGTTCTGAAGGCTCGACAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG MSV-KE TAGTTCTGAAGGCTCGACAAGGCA-GATCCACGGAGGAGCTGATATTTGGAG--GACAAG MSV-KE[NG] TAGTTCTGAAGGCTCGACAAGGCA-GATCCACGGAGGAGCTGATATTTGGTG--GACAAG SetSV TAGTCTTGAAGGCAAGACGCGGGA-GGTCCACGGAGGAGCTGATATTTGGAT--CTGAAG SSEV-[BS] TCCTTGTTAAGGCTCGCCGCGGGA-TCTCAACGGAGGAGGTGAGCTTTGG---TA----- SSEV-[Giz] TCCTTGTTAAGGCTCGCCGCGGGA-TCTCAACGGAGGAGGTGAGCTTTGG---TA----- SSEV-[Man] TCCTTGTTAAGGCTCGCCGCGGGA-TCTCAACGGAGGAGGTGAGCTTTGG---TA----- SSEV-[Asw] TCCTTGTTAAGGCTCGCCGCGGGA-TCTCAACGGAGGAGGTGAGCTTTGG---TA----- SSV-ZA TGGTTCTTAAGGCTCGCCGCGGAG-GCACTACGGAGGAGCTGACATTTGGGCCCAGGGAG SSREV TCGTTTTGAAGGCTCGACGAGGCG-GATCTACGGAGGAGCTGCATTTTGGGCCCAGGGAG PanSV-KE TACTTCTGAAGGCTCAGCGAGGTA-GATCCACGGAGGAGCTGATCTTTGGTCCTGGTGAG PanSV-Kar TACTTCTGAAGGCTCAGCGAGGTA-GATCCACGGAGGAGCTGATCTTTGGTCCTGGTGAG DSV TTGTTGTAAGATCTAACCGAGGAC-GCGTAGCGGAGGAGCTTGAATTTGGTCCCGCCGAG CSMV CGGCTTACGGACTACGGCTGTCAC-ACTTCGGCTGGGTTCGGAGGTGCGTTACCCGTGAC WDV-[SE] TGTTTCTGAAAGATTTAATTTTAG-TGTGTA-----AGGCGAAGAAGCAAAGGAGGACCG WDV-[FR] TGTTTCTGAAAGATTTAATTTTAG-TGTGTA-----AGGCGAAGAAGCAAAGGAGGACCG WDV-[CZ] TGTTTCTGAAAGATTTAAATTTAG-TGTGTA-----AGGCGAAGAAGCAAAGGAGGACCG TYDV TATTCTTGAAGGATTTGATCCTTC-TTTTGA-----AAGCAAAGAAGCAGAAGACGACAA BeYDV TGTTCTTGAAGGACTGCATCCTTC-TGTTCA-----AGGCGAAGAAGCAGAGAACCACAA MiSV-[JP] T-TTATTGCGGTGCTTTGCCTCAT-AGGTTGCCTTTGGGCAGCATACCGACTGTTCCTTA MiSV T-TTATTGCGGTGCTTTGCCTCAT-AGGTTGCCTTTGGGCAGCATACCGACTGTTCCTTA [ 421 480] RANDOM CTGAAGGTATATGGG----TATAAATAATGCGGTCAGTAGTTCGGATCTAGCACCTTGAG MSV-RE[N2AR3] CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC MSV-RE[N2AR4] CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC MSV-RE[N2AR6] CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC MSV-RE[N2AR2] CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC MSV-RE[N2AR5] CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC MSV-RE[N2AR8] CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC MSV-RE[SP1R10] CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC MSV-RE[SP2R13] CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC MSV-RE[SP2R11] CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC MSV-RE[SP2R7] CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC MSV-RE[SP2R12] CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC MSV-KE[SA] CTGTGGATAGGAGCAACCCTATCCCTAATCTA-CCAGCACCACCAAGTCAG------GGC MSV-KE[Kom] CTGTGGATAGGAGCAACCCTATCCCTAATCTA-CCTTCACCACCAAGTCAG------GGC MSV-KE CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC MSV-KE[NG] CTGTGGATAGGAGCAACCCTATCCCTAATATA-CCAGCACCACCAAGTCAG------GGC SetSV CTGTGGATAGGAGGCACCCTATCCCTAATACT-TTGGAACCTACAGCTCCG------GTG SSEV-[BS] CGTCAGATCTGGTTGGTTC-GCAGGC--TCCA-ACGCCGGTCGGTGTCTC---TGCTAGC SSEV-[Giz] CGTCAGATCTGGTTGGTTC-GCAGGC--TCCA-ACGCCGGTCGGTGTCTC---TGCTAGC SSEV-[Man] CGTCAGATCTGGTTGGTTC-GCAGGC--TCCA-ACGCCGGTCGGTGTCTC---TGCTAGC SSEV-[Asw] CGTCAGATCTGGTTGTTTC-GCAGGC--TCCA-ACGCCGGTCGGTGTCTC---TGCTAGC SSV-ZA CGCCACAGTTTACCAG--CTGTAGCTGTTGCT-CGGGTGGAAAATCCTCCGTGTCCCAGT SSREV CG--GGAGTCTGTCGCTTCTGCCGACAGTTCT-CGTCCAGTCGCTGCTCCGTCGGCCCCT PanSV-KE AGGC-CACCC-GTCGCCTCTGCCGACGGTTCT-CGTCCTGTTCCAGATCCGTCGCC-TCC PanSV-Kar AGGC-CAGCC-GTCGCTTCTGCCGACGGTTCT-CGCTCCGTTCCAGATCCGTCTCCGTCC DSV A--CAAG---GAGCGCTTTGGCACAAAGCGC----GGTGGTACCTAGATCTGAAGTTGTC CSMV CTCTGCGCA-AGCTAGTGCTGGTACCAGCACC-CCTGTG---TGTGTTCCCTGTGCTCCT WDV-[SE] AGGAA------ATTGGT--TACGGG-AATACA-CCG-GCCAGATTAAATGGTGA-CCAAC WDV-[FR] AGGAA------ATTGGT--TACGGG-AATACA-CCG-GCCAGATTAAATGGTGA-CCAAC WDV-[CZ] AGGAA------ATTGGT--TACGGG-AATACA-CCG-GCCAGATTAAATGGTGA-CCAAC TYDV CTGAG------ATAGGG--TTTGGT-AATACC-CCT-CTCAGAAGACCTGGTGA-AGGAA BeYDV CCGAA------ATCGGG--TTTGGA-CAAACC-CCG-GCTAGAAATCAGGATCA-TCCAG MiSV-[JP] AGGAGTGCCTTACTGAT--TGCAGTCAGCACG-CTTCATCAGGCGTCGTCGCGGGTCCTC MiSV AGGAGTGCCTTACTGAT--TGCAGTCAGCACA-CTTCATCAGGCGTCGTCGCGGGTCCTC [ 481 540] RANDOM AACTC-TTGGAGAGGATCATGGCTACGGGTC--AGTAAGCGACTA--TGGGGTGGGTAGT MSV-RE[N2AR3] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-RE[N2AR4] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-RE[N2AR6] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-RE[N2AR2] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-RE[N2AR5] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-RE[N2AR8] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-RE[SP1R10] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-RE[SP2R13] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-RE[SP2R11] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-RE[SP2R7] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-RE[SP2R12] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-KE[SA] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-KE[Kom] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-KE AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCAATCAGCCA---TGTCCACG MSV-KE[NG] AATCC--CGGG--CCAT-TTGTTCCAGGCACGGGATAAGCATTCAGCCA---TGTCCACG SetSV CATCC--CGGA--CCGT-TCGTTCCAGGTCAGGGATAAGCAGTAAGCCA---TGTCGACG SSEV-[BS] TGTCCGCCGGGACCTGTGCCGTTCACGG-CCTAGGTA-GCCCTCAGCCACCATGCCTCTT SSEV-[Giz] TGTCCGCCGGGACCTGTGCCGTTCACGG-CCTAGGTA-GCCCTCAGCCACCATGCCTCTT SSEV-[Man] TGTCCGCCGGGACCTGTGCCGTTCACGG-CCTAGGTA-GCCCTCAGCCACCATGCCTCTT SSEV-[Asw] TGTCCGCCGGGACCTGTGCCGTTCACGG-CCTAGGTA-GCCCTCAGCCACCATGCCTCTT SSV-ZA GGTTCAGTGGAAGCTAGACCGTTCACCG-GTTAGCTGTGCCCTCAGC----ATGCCTCTC SSREV CCTGTAAGTGACGCTAGGCCTTTCTCGG-TCTAGCT--GCCGTGAGC----ATGCCTACT PanSV-KE TGTCCGTCGGGACCTAGACCTTTCACGGGTCTAGA---GCACTCAGC----ATGTCTGGT PanSV-Kar TGTCCGCCGGGACCTAGACCTTTCGTGG-TCTAGA---GCACTCAGC----ATGTCCGGA DSV CCGTCACAAGGAGCGGACCCTCCCGCTA--CTGA--AAGC---CATCTGCCATGTCT-TC CSMV CAGGTACAGGCGTCCGTG--GATCTACCCTCCG--TAAGTAGGGTGTCATGAGTCCTGCC WDV-[SE] AA--GG--ACTCCCGA----GGTAAGGGGA---AGCGGAAGATG-GAAGAAG---GTGAA WDV-[FR] AA--GG--ACTCCCGA----GGTAAGGGGA---AACGTAAGCTC-GAAGAGG---GAGAA WDV-[CZ] AA--GG--ACTCCCGA----GGTAAGGGGA---AACGTAAGCTC-GAAGAGG---GAGAA TYDV ACCCTA--ATGGCGGG--CCGGTATAAGGGTTTGGTTTATTCCC-GGAAAAG---GGGAC BeYDV GACCGT--A-GGCGGG--GTG-CATCATG-TCTACTGTGA-CAT-GGGGTAA---GAAGC MiSV-[JP] GTCCGGCTGCAACAGGTCCTACTGCTGTTGTTGTACATAATGGT-GCAGAAGCGCAAAGA MiSV GTCCGGCTGCAACAGGTCCTACTGCTGTTGTTGTACATAATGGT-GCAGAAGCGCAAAGA [ 541 600] RANDOM TCTAGAACTGCATTCAACTCCGCTATGGTTAATGGTTGTCATACCATACTGGTACAGAAC MSV-RE[N2AR3] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAATAAGCGGGT-------TTC MSV-RE[N2AR4] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAATAAGCGGGT-------TTC MSV-RE[N2AR6] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAATAAGCGGGT-------TTC MSV-RE[N2AR2] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAATAAGCGGGT-------TTC MSV-RE[N2AR5] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAATAAGCGGGT-------TTC MSV-RE[N2AR8] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAATAAGCGGGT-------TTC MSV-RE[SP1R10] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAATAAGCGGGT-------TTC MSV-RE[SP2R13] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAATAAGCGGGT-------TTC MSV-RE[SP2R11] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAATAAGCGGGT-------TTC MSV-RE[SP2R7] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAATAAGCGGGT-------TTC MSV-RE[SP2R12] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAATAAGCGGGT-------TTC MSV-KE[SA] TCC------AAGAGGAAGCGGGGAGATGATGCGAATTGGAGTAAGCGGGTGC-------C MSV-KE[Kom] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAATAAGCGGGTGCTAATATTC MSV-KE TCC------AAGAGGAAGCGGGGAGATGATGCGAATTGGAGTAAGCGGGTG--A-----C MSV-KE[NG] TCC------AAGAGGAAGCGGGGAGATGATTCGAATTGGAGTAAGCGGGTG--A-----C SetSV TCC------AAGAGGAAGCGTGCCGATGAGGCGCAATGGAATAAGCGG-T-CCA-----C SSEV-[BS] GCCGGCAGCAAAAGGAAGAGGGCCGATGAGGTGGCCTGGTCTAAGCGTGGCACTAAGAAG SSEV-[Giz] GCCGGCAGCAAAAGGAAGAGGGCCGATGAGGTGGCCTGGTCTAAGCGTGGCACTAAGAAG SSEV-[Man] GCCGGCAGCAAAAGGAAGAGGGCCGATGAGGTGGCCTGGTCTAGGCGTGGCACTAAGAAG SSEV-[Asw] GCCGGCAGCAAAAGGAAGAGGGCCGATGAGGTGGCCTGGTCTAAGCGTGGCACTAAGAAG SSV-ZA TCTGGAATGAAGCGTAAGAGGTCCGATGAGACGGGTCGCCGTAAGAGATCTTCTGGGGTG SSREV ACCGCCGGGAAACGGAAGAGGACAGATGATGCCGCTTGGAGTAAGAGAGCTC---GACCG PanSV-KE GCTT---TGAAGCGCAAGCGTTCTGATGAGGTTGCCTGGAGTCGAAGGAGGCCCGTGAAG PanSV-Kar GCTT---TGAAGCGCAAGCGTTCGGATGAGGTTGCCTGGAGTCGAAGGAAGCCCGTCAAG DSV ATCG--ATGAAGAGGAAGAGGACCGATGAGGGGAGCGGCTCCCGTCGCTTCACTAAGAAG CSMV AGCTCATGGAAGAGGAAGAGGCCCTCTTCTTC--CTCCGCTCAGGCG-----------TC WDV-[SE] TCCAGCGGAAGGTGGAAGGGGG-C--TGT-GTA---T-----AAGCGG--CGTAAACAGG WDV-[FR] TCCAGCGGAAGGTGGAAGGGGG-C--TGT-GTA---T-----AAGCGG--CGTAAACAGG WDV-[CZ] TCCAGCGGAAGGTGGAAGGGGG-C--TGT-GTA---T-----AAGCGG--CGTAAACAGA TYDV GTTATGGCAAGACCTATCAGGCTC--TTG-GCG---TG----AAATCA--CAAAGAGAAT BeYDV G--GAAGCGAAGCGGAGGGGATTC--TAA-G-G---CG----AAG------AGTAGGGGC MiSV-[JP] TCTTCGGCGTTCTGATGCCGGTTC--TGCCGTT---CGGGCCAAACTG--CATAAGGCCT MiSV TCTTCGGCGTTCTGATGCCGGTTC--TGCCGTT---CGGGCCAAACTG--CATAAGGCCT [ 601 660] RANDOM TTCTAAAAGAGCGCAACGTCGCCTGTGCCAGTACACGCGCGGATGGGTAGCTACTATACG MSV-RE[N2AR3] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGCAGCAAGGCCGATAGG-C MSV-RE[N2AR4] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGCAGCAAGGCCGATAGG-C MSV-RE[N2AR6] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGCAGCAAGGCCGATAGG-C MSV-RE[N2AR2] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGCAGCAAGGCCGATAGG-C MSV-RE[N2AR5] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGCAGCAAGGCCGATAGG-C MSV-RE[N2AR8] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGCAGCAAGGCCGATAGG-C MSV-RE[SP1R10] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGCAGCAAGGCCGATAGG-C MSV-RE[SP2R13] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGCAGCAAGGCCGATAGG-C MSV-RE[SP2R11] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGCAGCAAGGCCGATAGG-C MSV-RE[SP2R7] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGCAGCAAGGCCGATAGG-C MSV-RE[SP2R12] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGCAGCAAGGCCGATAGG-C MSV-KE[SA] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGAAGCAAGGCCGATAGG-C MSV-KE[Kom] TAAGAAGA--AGCCATCTTCAGCTGGGCTGA-AGAGGGCTGGAAGCAAGGCCGATAGG-C MSV-KE TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGAAGCAAGGCCGATAGG-C MSV-KE[NG] TAAGAAGA--AGCCTTCTTCAGCTGGGCTGA-AGAGGGCTGGCAGCAAGGCCGATAGG-C SetSV CAAGAAGA--AAGGTTCTGCGCCGCAGGCGA-AGAAGCCTGGGGGTAAGGTTGAGAAG-C SSEV-[BS] AAGCCTG---AGCGTACATCTGCCGC-TCGG-GCTGGT-CCGTC--TAGGCGGATTCGTC SSEV-[Giz] AAGCCAG---AGCGTACATCTGCCGC-TCGG-GCTGGT-CCGTC--TAGGCGGATTCGTC SSEV-[Man] AAGCCAG---AGCGTACATCTGCCGC-TCGG-GCTGGT-CCGTC--TAGGCGGATTCGTC SSEV-[Asw] AAGCCAG---AGCGTACATCTGCCGC-TCGG-GCTGGT-CCGTC--TAGGCGGATTCGTC SSV-ZA AAGCAGG---GGCGTACATCTGCCGC-CCGT-GCTGGTTCTGCTGTTCGCAGGACTCGTC SSREV AAGGCCG---GGCGTACATCTGCCGC-CCGG-CCTGGTACTGCCGTTCGTCGGGTCCGTC PanSV-KE AAGCCAGTCCGCCGTGCCCCACCTCCGC-GG-GCTGGCCCCTCTGTCAGGAGAGGACTCC PanSV-Kar AAGCAAGAC-ACCGGGTTCCCCCTCCCCCGG-GCTGGCCCCTCTGTCAGGAGAGGACTCC DSV AAAT----CCGCCGCGAA------GGGGCGG-ACTAGCTC-GTCA--AGAGCTATTCGTC CSMV TAAGAAGCGCCGCGTGTACAGGCCTGCTGTT-TCACGTTCTCTCGCTCGGC-GAGA---- WDV-[SE] CGTATAAGGTAGT---A-CCTGTGAAGCC----CCCAGCTCTCT----GCGTATTCCGCT WDV-[FR] CGTATAAGGTAGT---A-CCTGTGAAGCC----CCCAGCTCTCT----GCGTATTCCGCT WDV-[CZ] CTTATAAGGTAGT---A-CCTGTGAAGCC----CCCAGCTCTCT----GCGTATTCCGCT TYDV TGGAGCAGCTAGT-TAA-CCAACCAGGCCG---TCCTGTTTCTAACAGGCGTCCTGCTCT BeYDV TCCAGTTCCTA---TAT-TC---CAAGAT------CTGTTTCCTCCAGGAGAGAATCGTT MiSV-[JP] CGACTGGGAAGGCCTTC-CCTGTAGGGAAG---CGGGCTCCTCTGCAGATACGGTCCTAT MiSV CGACTGGGAAGGCCTTC-CCTGTAGGGAAG---CGGGCTCCTCTGCAGATACGGTCCTAT [ 661 720] RANDOM CTGGTTCCGTAGCGGGTAACGATATACCTAATACATACCTCTATTGTATTAACACGCTAT MSV-RE[N2AR3] -CATCCCTCCAAATCCAGACACTCCAGCATGCCGGGACCACCATGATAACGGTCCCCTCC MSV-RE[N2AR4] -CATCCCTCCAAATCCAGACACTCCAGCATGCCGGGACCACCATGATAACGGTCCCCTCC MSV-RE[N2AR6] -CATCCCTCCAAATCCAGACACTCCAGCATGCCGGGACCACCATGATAACGGTCCCCTCC MSV-RE[N2AR2] -CATCCCTCCAAATCCAGACACTCCAGCATGCCGGGACCACCATGATAACGGTCCCCTCC MSV-RE[N2AR5] -CATCCCTCCAAATCCAGACACTCCAGCATGCCGGGACCACCATGATAACGGTCCCCTCC MSV-RE[N2AR8] -CATCCCTCCAAATCCAGACACTCCAGCATGCCGGGACCACCATGATAACGGTCCCCTCC MSV-RE[SP1R10] -CATCCCTCCAAATCCAGACACTCCAGCATTCCGGGACCACCATGATAACGGTCCCCTCC MSV-RE[SP2R13] -CATCCCTCCAAATCCAGACACTCCAGCATGCCGGGACCACCATGATAACGGTCCCCTCC MSV-RE[SP2R11] -CATCCCTCCAAATCCAGACACTCCAGCATGCCGGGACCACCATGATAACGGTCCCCTCC MSV-RE[SP2R7] -CATCCCTCCAAATCCAGACACTCCAGCATGCCGGGACCACCATGATAACGGTCCCCTCC MSV-RE[SP2R12] -CATCCCTCCAAATCCAGACACTCCAGCATGCCGGGACCACCATGATAACGGTCCCCTCC MSV-KE[SA] -CATCCCTCCAAATCCAGACACTCCAGCATGCTGGGACCACCATGATAACTGTCCCATCC MSV-KE[Kom] -CATCCCTCCAAATCCAGACACTCCAGCATGCTGGGACCACCATGATAACTGTCCCATCC MSV-KE -CATCCCTCCAAATCCAGACACTCCAGCATGCTGGGACCACCATGATAACGGTCCCCTCC MSV-KE[NG] -CATCCCTGCAAATCCAGACACTCCAGCACGCTGGGACCACCATGATAACGGTCCCCTCC SetSV -CTTCCCTCCAGATACAGACTTTACTCCACTCAGGTGACACGATGATCACCGTACCTTCA SSEV-[BS] -CACCCCTGCAGATAGCCACGTTTGTGGCAGCCGGTCAGTCTCTGGTGTCTGTCCCTTCC SSEV-[Giz] -CACCCCTGCAGATAGCCACGTTTGTGGCAGCCGGTCAGTCTATGGTGTCTGTCCCTTCC SSEV-[Man] -CACCCCTGCAGATAGCCACGTTTGTGGCAGCCGGTCAGTCTATGGTGTCTGTCCCTTCC SSEV-[Asw] -CACCCTTGCAGATAGCCACGTTTGTGGCAGCCGGTCAGTCTATGGTGTCTGTCCCTTCC SSV-ZA -CCTCTCTGCAGATCCAGACGCTGCAGGCGGCTGGTACTTCAATGATCGAAGTGCCATCC SSREV -CAGCTCTGCAGATCCAGACGCTCCAGGCGGCTGGCACGTCAATGATCACCGTTCCGTCG PanSV-KE -CTTCCCTTCAGATCCAGACCTTGGTGGCTGCCGGTGACACTATGATCACTGTGCCGTCC PanSV-Kar -CTGCCCTTCAGATCCAGACGCTTACGGCGGCTGGTGACACTATGATCACGGTGCCGTCC DSV -CCGCCCTCCAAATTCAAAGTTTTGTGTCTGCAGGTGCAGCCACAATTGCTGTTCCCACT CSMV --ACCTCTGCAGGTGCAAG-ACTT-----TGTCTGGGATACAGATGTGGCTTTCAATAGG WDV-[SE] ACAACTGGTTGAATAGCGACAGGACCA-ATATTGTTGTGGGTA----ATACACCCCGGGT WDV-[FR] ACAACTGGTTGAATAGCGACAGGACCA-ATATTGTTGTGGGTA----ATACACCCCGGGT WDV-[CZ] ACAACTGGTTGAATAGCGACAGGACCA-ATATTGTTGTGGGTA----ATACACCCCGGGT TYDV ACAGGTCGCAGAGTATCTGT-GGACGA-CGAATAAAACAGGAATGACGTTTTCTCCTGGT BeYDV GCAGGTTGCTACCTTTTCCT-GGACGA-GTTCCGGTTCGGGTATAAAGTTCTCTCCCGGT MiSV-[JP] GCA--TGGGAGACGCCTGCCACGGCGA-CCACCCCTTCCGGACCTATCGATATTACTGAC MiSV GCA--TGGGAGACGCCTGCCACGGCGA-CCACCCCTTCCGGACCTATCAGTATTACTGAC [ 721 780] RANDOM TCACTCCCTTGCGGG--AGTCGACTGCAGTAGGTAAGATT--TGA-GCGCCTAGTCGGGG MSV-RE[N2AR3] GGAGGCGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-RE[N2AR4] GGAGGCGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-RE[N2AR6] GGAGGCGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGATGGCAACCGCCA MSV-RE[N2AR2] GGAGGCGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-RE[N2AR5] GGAGGCGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-RE[N2AR8] GGAGGCGTATGTGACCTCATCAACAGCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-RE[SP1R10] GGAGGCGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-RE[SP2R13] GGAGGCGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-RE[SP2R11] GGAGGCGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-RE[SP2R7] GGAGGCGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-RE[SP2R12] GGAGGCGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-KE[SA] GGAGGAGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-KE[Kom] GGAGGAGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-KE GGAGGAGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA MSV-KE[NG] GGAGGAGTATGTGACCTCATCAACACCTATGCCCGAGGAT-CTGACGAGGGCAACCGCCA SetSV GGTGGGGTCTGTGACCTCATCAATACATATGCCCGAGGGT-CCGATGAGGGCAACCGTCA SSEV-[BS] GGTGGTGTTTGTGAACTGCTGGGCTCCTATGCTCGAGGCG-CTGACGAGGCCAACCGTCA SSEV-[Giz] GGTGGTGTTTGTGAACTGCTAGGCTCCTATGCTCGAGGCG-CTGACGAGGCCAACCGTCA SSEV-[Man] GGTGGTGTTTGTGAACTGCTGGGCTCCTATGCTCGAGGCG-CTGACGAGGCCAACCGTCA SSEV-[Asw] GGTGGGGTCTGTGAACTGCTGGGCTCCTATGCTCGAGGCG-CTGACGAGGCCAACCGTCA SSV-ZA GGTGGCGTTTGTGACCTTCTTGGTTCCTTCTCCCGTGGCT-CTGACGAGGGGAACAGGCA SSREV GGTGGTGTTTGTGATATCCTCGGGTCCTATTCACGAGGCT-CTGACGAGTGCAATCGCCA PanSV-KE GGAGGCATCTGCAGTCTGATTGGCACGTATGCCCGGGGCT-CTGGTGAAGGTGAACGCCA PanSV-Kar GGCGGCATCTGCAGTCTGATTGGCACGTATGCCCGGGGCT-CTGATGAAGGTAACCGCCA DSV GGCGGAGTATGTCATCTACTGAGCTCCTACAGCCGAGGCT-CCGGCGAAGGAGACCGGCA CSMV GGAGGAGGATGCTACCTCCTCACTAGCTATGCTCGAGGCT-CTGCCGAGAATCAGCGGAA WDV-[SE] CGATCTGATTACC-T----------GTTTTGCTCAGGG-TAAGGCCGATAATAATCGGCA WDV-[FR] CGATCTGATTACC-T----------GTTTTGCTCAGGG-TAAGGCCGATAATAATCGGCA WDV-[CZ] CGATCTGATTACC-T----------GTTTTGCTCAGGG-TAAGGCCGATAATAATCGGCA TYDV GGGTCTACTTTCC-T-CATCAC-TAATTTCCCTCAAGG-GGCGAACGAGAACTGTAGGCA BeYDV GGTGCTGCTTATC-T-TGTGAG-CAATTTTCCACAGGG-TGCCAACGATAATTGTCGTCA MiSV-[JP] GGCACCATCTTCA-TGTGTAACACCATTGACCCTGGGACTGGAGACGATCAGAGATCGCG MiSV GGTACCATCTTCA-TGTGTAACACCATTGACCCTGGGACTGGAGACGATCAGAGATCGCG [ 781 840] RANDOM GGTTCGCACAGCAATCGC-TAAAGCGCTCTTTTGATGGCGTATAGGTAGTTATAT-CTAA MSV-RE[N2AR3] CACCAGCGAGACTCTGACGTACAAGATTGCCATC--GACTACCACTTCGTTGC-TGACGC MSV-RE[N2AR4] CACCAGCGAGACTCTGACGTACAAGATTGCCATC--GACTACCACTTCGTTGC-TGACGC MSV-RE[N2AR6] CACCAGCGAGACTCTGACGTACAAGATTGCCATC--GACTACCACTTCGTTGC-TGACGC MSV-RE[N2AR2] CACCAGCGAGACTCTGACGTACAAGATTGCCATC--GACTACCACTTCGTTGC-TGACGC MSV-RE[N2AR5] CACCAGCGAGACTCTGACGTACAAGATTGCCATC--GACTACCACTTCGTTGC-TGACGC MSV-RE[N2AR8] CACCAGCGAGACTCTGACGTACAAGATTGCCATC--GACTACCACTTCGTTGC-TGACGC MSV-RE[SP1R10] CACCAGCGAGACTCTGACGTACAAGATTGCCATC--GACTACCACTTCGTTGC-TGACGC MSV-RE[SP2R13] CACCAGCGAGACTCTGACGTACAAGATTGCCATC--GACTACCACTTCGTTGC-TGACGC MSV-RE[SP2R11] CACCAGCGAGACTCTGACGTACAAGATTGCCATC--GACTACCACTTCGTTGC-TGACGC MSV-RE[SP2R7] CACCAGCGAGACTCTGACGTACAAGATTGCCATC--GACTACCACTTCGTTGC-TGACGC MSV-RE[SP2R12] CACCAGCGAGACTCTGACGTACAAGATTGCCATC--GACTACCACTTCGTTGC-TGACGC MSV-KE[SA] CACCAGCGAGACTCTGACGTACAAGATCGCCGTC--GACTACCACTTCGTTGC-CGACGC MSV-KE[Kom] CACCAGCGAGACTCTGACGTACAAGATCGCCGTC--GACTACCACTTCGTTGC-CGACGC MSV-KE CACCAGCGAGACTCTGACGTACAAGATTGCCGTC--GACTACCACTTCGTTGC-CGACGC MSV-KE[NG] CACCAGCGAGACTCTGACGTACAAGATCGCCATC--GACTACCACTTCGTTGC-CGACGC SetSV CACCAGCGAAACCCTAACGTACAAAGTTGGGGTC--GATTACCACTTCGTTGC-TGACGC SSEV-[BS] CACCAACGAGACTGTCACGTACAAGGTTGCCTTG--GACTACCACTTCGTTGC-TACTGC SSEV-[Giz] CACCAACGAGACTGTCACGTACAAGGTTGCCTTG--GACTACCACTTCGTTGC-TACTGC SSEV-[Man] CACCAACGAGACTGTCACGTACAAGGTTGCCTTG--GACTACCACTTCGTTGC-TACTGC SSEV-[Asw] CACCAACGAGACTGTCACGTACAAGGTTGCCTTG--GACTACCACTTCGTTGC-TACTGC SSV-ZA CACCAACGAGACTGTCATCTACAAGGTGGCACTG--GACTACCACTTCATTGC-TACCGC SSREV CACCAACGAGACTGTCACCTACAAGGTAGCTCTG--GACTACCATTTCGTTGC-TAGTGC PanSV-KE CACCAACGAGACTCTGACGTACAAGGTCGCTCTG--GACTACCACTTCGTTGC-CACCGC PanSV-Kar CACCAACGAGACTCTGACGTACAAGGTTGCGCTG--GACTACCACTTCGTTGC-TACTGC DSV CACCAACGAGACTGTCACGTACAAAGCCGCATTC--GACTACCACTTCAGTGC-TAACGC CSMV GACCGCTGAGACCATCACGTACAAGGTGGCAGTT--AACCTGGGGTGTGCTAT-CTCCGG WDV-[SE] TACAAATCAGACCGTCCTATACAAATTTAACATACAGGGTACCTGCTATATGTCCGATGC WDV-[FR] TACAAATCAGACCGTCCTATACAAATTTAACATACAGGGTACCTGCTATATGTCCGATGC WDV-[CZ] TACAAATCAGACCGTCCTATACAAATTTAACATACAGGGTACCTGCTATATGTCCGATGC TYDV CACCAACCGGACAATTACCTACAAGATGGCTGTGAAGACGTGGGTTGCTTTGGATGGCTC BeYDV CACCAACAAGACCGTGTTATACAAATTCATGGCCAAGAATACTATATACTTGGACT-CTA MiSV-[JP] -GCATACCACGATGCTCTATAAGATGTCATTGAACGTGGTGCTCTGGCCTGGTGCGACT- MiSV -GCATACCACGATGCTCTATAAGATGTCATTGAACGTGGTGCTCTGGCCTGGTGCGACT- [ 841 900] RANDOM GTTAAGGGGTTAGGACTATCACA--CTTGGATTGGAG-------AACT--TGCATCGTAT MSV-RE[N2AR3] GGCAGCCTGCCGGTACTCCAACA--CCGGAACCGGTGTGATG-TGGCTGGTGTATGACAC MSV-RE[N2AR4] GGCAGCCTGCCGGTACTCCAACA--CCGGAACCGGTGTGATG-TGGCTGGTGTATGACAC MSV-RE[N2AR6] GGCAGCCTGCCGGTACTCCAACA--CCGGAACCGGTGTGATG-TGGCTGGTGTATGACAC MSV-RE[N2AR2] GGCAGCCTGCCGGTACTCCAACA--CCGGAACCGGTGTGATG-TGGCTGGTGTATGACAC MSV-RE[N2AR5] GGCAGCCTGCCGGTACTCCAACA--CCGGAACCGGTGTGATG-TGGCTGGTGTATGACAC MSV-RE[N2AR8] GGCAGCCTGCCGGTACTCCAACA--CCGGAACCGGTGTGATG-TGGCTGGTGTATGACAC MSV-RE[SP1R10] GGCAGCCTGCCGGTACTCCAACA--CCGGAACCGGTGTGATG-TGGCTGGTGTATGACAC MSV-RE[SP2R13] GGCAGCCTGCCGGTACTCCAACA--CCGGAACCGGTGTGATG-TGGCTGGTGTATGACAC MSV-RE[SP2R11] GGCAGCCTGCCGGTACTCCAACA--CCGGAACCGGTGTGATG-TGGCTGGTGTATGACAC MSV-RE[SP2R7] GGCAGCCTGCCGGTACTCCAACA--CCGGAACCGGTGTGATG-TGGCTGGTGTATGACAC MSV-RE[SP2R12] GGCAGCCTGCCGGTACTCCAACA--CCGGAACCGGTGTGATG-TGGCTGGTGTATGACAC MSV-KE[SA] GGCTGCCTGCCGCTACTCCAACA--CCGGAACCGGTGTAATG-TGGCTGGTGTATGACAC MSV-KE[Kom] GGCTGCCTGCCGCTACTCCAACA--CCGGAACCGGTGTAATG-TGGCTGGTGTATGACAC MSV-KE GGCAGCCTGCCCGTACTCCAACA--CCGGAACCGGTGTAATG-TGGCTGGTGTATGACAC MSV-KE[NG] GGCAGCCTGCCGCTACTCCAACA--CCGGTACCGGTGTAATG-TGGCTGGTGTATGACAC SetSV CGCATCCTGCAAGTACTCCAACC--GCGGAACAGGTGTGATG-TGGCTGGTGTACGACAC SSEV-[BS] AGCCGCCTGCAAGTATTCTAGCA--TTGGCACTGGCGTGGCC-TGGTTGGTGTATGATGC SSEV-[Giz] AGCCGCCTGCAAGTATTCCAGCA--TTGGCACTGGCGTGGCC-TGGTTGGTGTATGATGC SSEV-[Man] AGCCGCCTGCAAGTATTCCAGCA--TTGGCACTGGCGTGGCC-TGGTTGGTGTATGATGC SSEV-[Asw] AGCCGCCTGCAAGTATTCCAGCA--TTGGCACTGGCGTGGCC-TGGTTGGTGTATGACGC SSV-ZA TGCTGCCTGCAAGTATTCATCTA--TTGGCACTGGCGTGGTG-TGGTTGGTGTATGACGC SSREV AGCAGCCTGCAAGTATTCCAGTA--TTGGCACTGGCGTGGTG-TGGTTGGTGTACGACGC PanSV-KE TGCTGCGTGTAAATACAGCAGTA--TTGGCATTGGAGTGTGC-TGGTTGGTGTACGATGC PanSV-Kar TGCGGCCTGCAAGTACTCCAGCA--TTGGAGTGGGTGTCATG-TGGTTGGTGTATGATGC DSV TGGACCCTGCGCATACTCCAGTA--TTGGAGTAGGTGTCTTG-TGGTTGGTGTATGACGC CSMV GACGATGCAGCAATATTGCATCAGCTCCCGACCGGTCTG--C-TGGATTGTATACGACGC WDV-[SE] ATCAGCTC-CGTTCATCGGTCCAGTCCG---CC--TCTACCACTGGTTAGTCTATGATGC WDV-[FR] ATCAGCTC-CGTTCATCGGTCCAGTCCG---CC--TCTACCACTGGTTAGTCTATGATGC WDV-[CZ] ATCAGCTC-CATTCATCGGTCCAGTCCG---CC--TCTACCACTGGTTAGTCTATGATGC TYDV GATG-TTC-TCT-AGGGTTTCAAAATTC---CCAATCTATTTCTGGTTGGTGTATGATAA BeYDV GTCA-CTA-TATGAAAGTGTTTAGAGCT---CCATTTCATTTTTGGCTGGTGTACGACAA MiSV-[JP] -ACGGCCC-AAATAGTTGGGCCTTTCCG---C--GTGAACTTCTGGCTTGTGTATGATGC MiSV -ACGGCCC-AAATAGTTGGGCCTTTCCG---C--GTGAACTTCTGGCTTGTGTATGATGC [ 901 960] RANDOM GGGTATCAG-AAAGAGGTTTCAA----GCAAGGCG-GTGCGAAAGCTCTAGCGGTTCTGA MSV-RE[N2AR3] CACTCCCGGCGGACAAGCTCCGACCCCGCAGACTATATTTGCCTACCCGGACACCCTCAA MSV-RE[N2AR4] CACTCCCGGCGGACAAGCTCCGACCCCGCAGACTATATTTGCCTACCCGGACACCCTCAA MSV-RE[N2AR6] CACTCCCGGCGGACAAGCTCCGACCCCGCAGACTATATTTGCCTACCCGGACACCCTCAA MSV-RE[N2AR2] CACTCCCGGCGGACAAGCTCCGACCCCGCAGACTATATTTGCCTACCCGGACACCCTCAA MSV-RE[N2AR5] CACTCCCGGCGGACAAGCTCCGACCCCGCAGACTATATTTGCCTACCCGGACACCCTCAA MSV-RE[N2AR8] CACTCCCGGCGGACAAGCTCCGACCCCGCAGACTATATTTGCCTACCCGGACACCCTCAA MSV-RE[SP1R10] CACTCCCGGCGGACAAGCTCCGACCCCGCAGACTATATTTGCCTACCCGGACACCCTCAA MSV-RE[SP2R13] CACTCCCGGCGGACAAGCTCCGACCCCGCAGACTATATTTGCCTACCCGGACACCCTCAA MSV-RE[SP2R11] CACTCCCGGCGGACAAGCTCCGACCCCGCAGACTATATTTGCCTACCCGGACACCCTCAA MSV-RE[SP2R7] CACTCCCGGCGGACAAGCTCCGACCCCGCAGACTATATTTGCCTACCCGGACACCCTCAA MSV-RE[SP2R12] CACTCCCGGCGGACAAGCTCCGACCCCGCAGACTATATTTGCCTACCCGGACACCCTCAA MSV-KE[SA] CACTCCCGGCGGACAAGCTCCGACCCCGCAAACTATATTTGCCTACCCTGACACGCTAAA MSV-KE[Kom] CACTCCCGGCGGACAAGCTCCGACCCCGCAAACTATATTTGCCTACCCTGACACGCTAAA MSV-KE CACTCCCGGCGGACAAGCTCCGACCCCGCAAACTATATTTGCCTACCCTGACACGCTAAA MSV-KE[NG] CACTCCCGGCGGACAAGCTCCGACCCCGCAAACTATATTTGCCTACCCTGACACGCTGAA SetSV GACTCCCGGCGGAAACGCACCCACCACCCAAGATATTTTCGCATACCCCTCCGCACTCAA SSEV-[BS] ACAGCCTACCGGAAATACCCCGACGACGAAGGACATCTTCGGCTATAGTGACTCCCTTGT SSEV-[Giz] ACAGCCTACCGGAAATACCCCGACGACGAAGGACATCTTCGGCTATAGTGACTCCCTTGT SSEV-[Man] ACAGCCTACCGGAAATACCCCGACGACGAAGGACATCTTCGGCTATAGTGACTCCCTTGT SSEV-[Asw] ACAGCCTACCGGAAATACCCCGACGACGAAGGACATCTTCGGCTATAATGACTCCCTTGT SSV-ZA ACAGCCTTCGGGGAATCCCCCGACAGTGAAGGATATTTTCCCTCACCCTGATACTTTGAC SSREV ACAGCCTCAGGGAAATTGTCCTACGGTGAAAGACATCTTCCCGCATCCTGACACTTTGAG PanSV-KE GCAGCCTACCGGCACTGCCCCGACCGTCCAAGACATTTTTCCTCACCCGGCTACTCTCTC PanSV-Kar GCAGCCGACCGGCAATTCACCGGAGGTGAAGGACATCTTCCCTCACTCCGATACGCTCTC DSV ACAACCCAGTGGTCAGGTACCAGCGGTAACTGACATATTTCCGCATGATACAACCCTACA CSMV GGCCCCCACTGGCTCTGCTGTTACCCCGAAGGACATCTTCGGGTACCCGGAAGGATTAGT WDV-[SE] AGAGCCGAAACAGGCTATGCCAGACGCCACTGACATCTTT-ACGATGCCTTGGAATCTGC WDV-[FR] AGAGCCGAAACAGGCTATGCCAGACGCCACTGACATCTTT-ACGATGCCTTGGAATCTGC WDV-[CZ] AGAGCCGAAACAGGCTATGCCAGACGCCACTGACATCTTT-ACGATGCCTTGGAATCTGC TYDV AAACCCTGGCGAGAGTAATCCATCGCCTTCCGCTATTTTTGATAGTC------TATATCA BeYDV GTCTCCTGGTGCTAATGTTCCCAGTACTGGGGATATATTTGAGGGACCTTCGTTGTTTCC MiSV-[JP] TGCCCCGACTGGAGTTGTCCCGAAGCTGACGGACATCTTTGACGTGGCCT----ATCCG- MiSV TGCCCCGACTGGAGTTGTCCCGAAGCTGACGGACATCTTTGACGTGGCCT----ATCCG- [ 961 1020] RANDOM CCTGCCGATTGATAAATCAGGGGTTTTTGATTAATCATAGGCCTGGCTC----CGAAAT- MSV-RE[N2AR3] AGCCTGGCCGGCGACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-RE[N2AR4] AGCCTGGCCGGCGACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-RE[N2AR6] AGCCTGGCCGGCGACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-RE[N2AR2] AGCCTGGCCGGCGACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-RE[N2AR5] AGCCTGGCCGGCGACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-RE[N2AR8] AGCCTGGCCGGCGACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-RE[SP1R10] AGCGTGGCCGGCGACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-RE[SP2R13] AGCCTGGCCGGCGACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-RE[SP2R11] AGCCTGGCCGGCGACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-RE[SP2R7] AGCCTGGCCGGCGACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-RE[SP2R12] AGCCTGGCCGGCGACATGGAAGGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-KE[SA] AGCGTGGCCGGCCACATGGAAAGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-KE[Kom] AGCGTGGCCGGCCACATGGAAAGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-KE AGCGTGGCCGGCCACATGGAAAGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG MSV-KE[NG] AGCGTGGCCGGCCACATGGAAAGTGAGCCGGGAGCTGTGTCATCGCTTCGTGGTGAAACG SetSV GGCCTGGCCGACTACTTGGAAAGTTAGTCGGGAGTTGTGTCATCGCTTCGTGGTGAAGCG SSEV-[BS] GGCGTTCCCCTACACATGGAAGGTTTCAAGGGAGGTGTGTCATCGCTTCGTGGTGAAGAG SSEV-[Giz] GGCGTTCCCCTACACATGGAAGGTTTCAAGGGAGGTGTGTCATCGCTTCGTGGTGAAGAG SSEV-[Man] GGCGTTCCCCTACACATGGAAGGTTTCAAGGGAGGTGTGTCATCGCTTCGTGGTGAAGAG SSEV-[Asw] GGCGTTCCCCTACACATGGAAGGTTTCAAGGGAGGTGTGTCATCGCTTCGTGGTGAAGAG SSV-ZA AGCGTTCCCGTACACCTGGAAGGTTGGTCGTGAAGTGTGTCATCGGTTCGTGGTGAAGCG SSREV CGCCTTCCCGTATACCTGGAAGGTCGGCCGAGAGGTGTGCCATCGGTTCGTGGTGAAGCG PanSV-KE AGCCTTTCCCTACACCTGGAAGGTGGGGAGGGAGGTCTGCCATCGCTTCGTTGTTAAACG PanSV-Kar AGCGTTCCCGTACACTTGGAAGGTTGGCAGGGAGGTCTGCCATCGCTTCGTTGTTAAACG DSV GTCCTTTCCATACACCTGGAAGGTGGGAAGGGAAGTGTGTCACCGCTTCGTGGTGAAACG CSMV TAACTGGCCTACTACTTGGAAGGTGGCCAGAGCGGTGTCCCACCGCTTCATAGTGAAGCG WDV-[SE] TG-----CCGAGTACGTGGACTGTGCAACGTGCTTGGTCGCATCGATTCGTGGTGAAAAG WDV-[FR] TG-----CCGAGTACGTGGACTGTGCAACGTGCTTGGTCGCATCGATTCGTGGTGAAAAG WDV-[CZ] TG-----CCGAGTACGTGGACTGTGCAACGTGCTTGGTCGCATCGATTCGTGGTGAAAAG TYDV AGATCAGCCTGGGACTTGGACTGTGACTCGTAATGTATGTCACAGGTTTGTCGTTAAAAA BeYDV TCATAATCCTTGGACGTGGACTGTGTCTAGGGCTGCTTGCCATCGTTTTGTGGTGAAGAA MiSV-[JP] -AAGTGGGGAAACACTTGGCAGGTTTCCCGCTCTAATGTGCATAGGTTCATAGTTAAGCG MiSV -AAGTGGGGAAACACTTGGCAGGTTTCCCGCTCTAATGTGCATAGGTTCATAGTTAAGCG [ 1021 1080] RANDOM -TAATGCGACTCTTAGCGTGC---CCATTTGCCGCTAAATTGAGTGGTTAGCTTACTAAC MSV-RE[N2AR3] GCGTTGG-TTGTTCAACATGGAGACCGACGGGCGG---ATTGGTTCGG-ACATTCCT--C MSV-RE[N2AR4] GCGTTGG-TTGTTCAACATGGAGACCGACGGGCGG---ATTGGTTCGG-ACATTCCT--C MSV-RE[N2AR6] GCGTTGG-TTGTTCAACATGGAGACCGACGGGCGG---ATTGGTTCGG-ACATTCCT--C MSV-RE[N2AR2] GCGTTGG-TTGTTCAACATGGAGACCGACGGGCGG---ATTGGTTCGG-ACATTCCT--C MSV-RE[N2AR5] GCGTTGG-TTGTTCAACATGGAGACCGACGGGCGG---ATTGGTTCGG-ACATTCCT--C MSV-RE[N2AR8] GCGTTGG-TTGTTCAACATGGAGACCGACGGGCGG---ATTGGTTCGG-ACATTCCT--C MSV-RE[SP1R10] GCGTTGG-TTGTTCAACATGGAGACCGACGGGCGG---ATTGGTTCGG-ACATTCCT--C MSV-RE[SP2R13] GCGTTGG-TTGTTCAACATGGAGACCGACGGGCGG---ATTGGTTCGG-ACATTCCT--C MSV-RE[SP2R11] GCGTTGG-TTGTTCAACATGGAGACCGACGGGCGG---ATTGGTTCGG-ACATTCCT--C MSV-RE[SP2R7] GCGTTGG-TTGTTCAACATGGAGACCGACGGGCGG---ATTGGTTCGG-ACATTCCT--C MSV-RE[SP2R12] GCGTTGG-TTGTTCAACATGGAGACCGACGGGCGG---ATTGGTTCGG-ACATTCCT--C MSV-KE[SA] GCGATGG-TTGTTCAACATGGAGACCGACGGTCGG---ATTGGTTCGG-ATATCCCT--C MSV-KE[Kom] GCGATGG-TTGTTCAACATGGAGACCGACGGTCGG---ATTGGTTCGG-ATATCCCT--C MSV-KE GCGATGG-TTGTTCAACATGGAGACCGACGGTCGG---ATTGGTTCGG-ATATTCCT--C MSV-KE[NG] GCGATGG-TTGTTCAACATGGAGACCGACGGGCGC---ATTGGTTCGG-ATATTCCT--C SetSV GCGATGG-CTCTTCACAATGGAGACTGACGGTCGG---ATAGGCTCGG-ATACACCA--C SSEV-[BS] GAGATGC-ACTTTCACGATGGAGACCGACGGTCGG---ATTGGGTCGG-ATGTTCCT--C SSEV-[Giz] GAGATGC-ACTTTCACGATGGAGACCGACGGTCGG---ATTGGGTCGG-ATGTTCCT--C SSEV-[Man] GAGATGC-ACTTTCACGATGGAGACCGACGGTCGG---ATTGGGTCGG-ATGTTCCT--C SSEV-[Asw] GAGATGC-ACTTTCACGATGGAGACCGACGGTCGG---ATTGGGTCGG-ATGTTCCT--C SSV-ZA GAGGTGG-ACTTTCACGATGGAAGTTAACGGGCGT---ATCGGTTCCG-ATATACCT--C SSREV GCGGTGG-ACTTTCACGATGGAAGTCAATGGACGG---ATTGGATCTG-ATATGCCT--C PanSV-KE GCGCTGG-TGCTTTACCATGGAGACTAACGGCCGG---ATCGGTTCAG-ATACTCCC--C PanSV-Kar GCGCTGG-TGCTTCACCATGGAGACTAACGGCCGG---ATCGGTTCAG-ATGTGCCT--C DSV CCGGTGG-TGTTTCACAATGGAGACCAACGGGCGC---ATCGGTAGTG-ACAAACCT--C CSMV CCGATGG-GTCTTCACCATGGAGTCCAACGGCTCG-----CGCTTCGA-CCGTGACT--A WDV-[SE] GAAGTGGACCGTGAACCTTGTTA-CTGATGGACGGAAGGTCGGGTCTA-AGACCGTTGAC WDV-[FR] GAAGTGGACCGTGAACCTTGTTA-CTGATGGACGGAAGGTTGGGTCTA-AGACCGTTGAC WDV-[CZ] GAAGTGGACCGTGAACCTTGTTA-CTGATGGACGGAAGGTCGGGTCTA-AGACCGTTGAC TYDV AACCTGG-TCATGTATGTTGGAGTCTAATGGA--GTTGACCCTAATGC-TAAACAAGGGT BeYDV AACGTGG-TCATGCGTGGTGGAGAGCAATGGT--ATTGACCCAACCAA-AGGTCAAGGAG MiSV-[JP] TAAATGGAAGGTGGAC--TACCAGTCCTCTGGCGTCCCTGTTGGCAAG-AGACAGAGCAG MiSV TAAATGGAAGGTGGAC--TACCAGTCCTCTGGCGTCCCTGTTGGCAAG-AGACAGAGCAG [ 1081 1140] RANDOM TGACTCATTATCCAGTCGTTTTTCCTGAAGGACTTGATATCACGCTCCTGGGCTTTACCT MSV-RE[N2AR3] C-ATCGAATG-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-RE[N2AR4] C-ATCGAATG-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-RE[N2AR6] C-ATCGAATG-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-RE[N2AR2] C-ATCGAATG-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-RE[N2AR5] C-ATCGAATG-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-RE[N2AR8] C-ATCGAATG-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-RE[SP1R10] C-ATCGAATG-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-RE[SP2R13] C-ATCGAATG-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-RE[SP2R11] C-ATCGAATG-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-RE[SP2R7] C-ATCGAATG-GAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-RE[SP2R12] C-ATCGAATG-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-KE[SA] C-CTCGAATA-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-KE[Kom] C-CTCGAATA-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-KE C-ATCGAATG-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG MSV-KE[NG] C-CTCGAATG-CAAGTTGGAAGCCTTGCAAGCGCAACATCTACTTCCACAAGTTCACGAG SetSV C-GAGCAACC-AGAGTTGGCCGCCATGTAAGCGGAACGTTGACTTCCACAAGTTCACTAG SSEV-[BS] C-GGCGAATA-CCTCATGGTCGCCTTGTAAGCGGGCGATTTACTTCCATAAGTTCTTCAC SSEV-[Giz] C-GGCGAATA-CCTCATGGTCGCCTTGTAAGCGGGCGATTTACTTCCATAAGTTCTTCAC SSEV-[Man] C-GGCGAATA-CCTCATGGTCGCCTTGTAAGCGGGCGATTTACTTCCATAAGTTCTTCAC SSEV-[Asw] C-GGCGAATA-CCTCATGGTCGCCTTGTAAGCGGGCGATTTACTTCCATAAGTTCTTCAC SSV-ZA CTAGTACCAG-CTGT-TGGCCCCCGTGCCGTAAGAACATTTACTTCCACAAGTTTGTCAC SSREV CT-GCGACTG-CCGTGTGGCCCCCGTGCCGGAAGAACATATACTTCCACAAGTTTGTCAC PanSV-KE C-GTCCAACG-TGGCTTGGCCACCCTGCAAGAAGGACATCTACTTCCACAAGTTCTGCAC PanSV-Kar C-GGCCAATA-CCGCTTGGCCGCCTTGCAAGAAGGACATCTACTTCCACAAGTTCTGCAC DSV CAAGC-AACG-CAGTCTGGCCTCCGTGCAAGCGGAGTATTTACTTCCACAAGTTCGCGAC CSMV C-ACCAACCT-CCCGGCTGCTATACCGCAGTCCCTTCCCGT-TCTGAACAAGTTCGCGAA WDV-[SE] CAGC--GCTA-CAA-CTGGGTAGTCGGCAAGAATATCGTTGACGCAAATAAGTTCTTCAA WDV-[FR] CAAC--GCTA-CAA-CTGGGTAGTCGGCAAGAATATCGTGGACGCAAGCAAGTTCTTCAA WDV-[CZ] CAAC--GCTA-CAA-CTGGGTAGTCGGCAAGAATATCGTGGACGCCAACAAGTTCTTCAA TYDV CTTCTTACTA-TGG-TCCTGGGCCTTGTTATCAGTGGAGGCATGTTACTAAGTTTTTTAA BeYDV CTACTTATTA-TGG-GCCTGGGCCTTGTAATCAGGTTAAGTCCTGTAATAAGTTCTTTAA MiSV-[JP] CGG--TGTT---GA-AGACGCCCCTGTTAATAATGTGGTGGAGTGCAACAAGTTCTTCGA MiSV CGG--TGTT---GA-ATACGCCCCTGTTAATAATGTGGTGGAGTGCAACAAGTTCTTCGA [ 1141 1200] RANDOM CGTGCAGAGGCCCCTAACTC-GTAGGTGTAGCTTACTAACTGACTCAT-ACAATGATAGA MSV-RE[N2AR3] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-RE[N2AR4] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-RE[N2AR6] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-RE[N2AR2] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-RE[N2AR5] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-RE[N2AR8] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-RE[SP1R10] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-RE[SP2R13] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-RE[SP2R11] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-RE[SP2R7] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-RE[SP2R12] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-KE[SA] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-KE[Kom] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-KE TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA MSV-KE[NG] TGGGTTGGGAGTGAGAACGCAGTGGAAGAATGTAACGGACGGAGGAGTTGGTGCCATCCA SetSV TGGGTTGGGAGTGAGGACGCAGTGGAAGAACGTCACAGACGGTGGAGTTGGTGCGATACA SSEV-[BS] CGGCCTGGGTGTGAAGACGGAGTGGAAGAATCTCACAGACGGTGGTGTGGGAGCGATTAA SSEV-[Giz] CGGCCTGGGTGTGAAGACGGAGTGGAAGAATCTCACAGACGGTGGTGTGGGAGCGATTAA SSEV-[Man] CGGCCTGGGTGTGAAGACGGAGTGGAAGAATCTCACAGACGGTGGTGTGGGAGCGATTAA SSEV-[Asw] CGGCCTGGGTGTGAAGACGGAGTGGAAGAATCTCACAGACGGTGGTGTGGGAGCGATTAA SSV-ZA CGGCTTAGGTGTTAAAACGGAGTGGAAGAACACTACCGGCGGTGAAGTCGGTGACATTAA SSREV CGGACTCGGCGTAAAAACGGAGTGGAAGAATACAACCGGCGGTGAAGTCGGAGACATTAA PanSV-KE GGGCTTGGGCGTGAAGACGGAGTGGAAGAACGTTACAGACGGGAAGGACGGCGCCATCAA PanSV-Kar GGGACTCGGCGTGAAGACGGAGTGGAAGAACGTTACAGACGGGAAGGTCGGCGCTATTAA DSV AGGACTCGGCGTCAAGACCGAGTGGAAGAATACAACGGATGGTGGCGTAGGCAGCATCAA CSMV GCAGTTGGGCGTGCGGACCGAGTGGAAGAACGCTGAAGGCGGAGACTTCGGCGACATAAA WDV-[SE] AGGTTTGCGTGTCACGACGGAGTGGATGAACACGGGTGACGGCAAGATAGGCGACATTAA WDV-[FR] AGGTTTGCGTGTCACGACGGAGTGGATGAACACGGGTGACGGCAAGATAGGCGACATTAA WDV-[CZ] AGGTTTGCGTGTCACGACGGAGTGGATGAACACGGGTGACGGCAAGATAGGCGACATTAA TYDV ACGTTTAGGGGTTAGCACAGAGTGGAAGAATTCTTCCACTGGTGATGTTGCTGATATTAA BeYDV GAGATTGGGTGTGTCCACAGAGTGGAAAAATAGTGCAACGGGTGATGTTGGTGATATAAA MiSV-[JP] GAAGCTGCGTGTGAAGACCGAATGGGCGAACACCTCTACCGGTGCAATTGGGGACGTGAA MiSV GAAGCTGCGTGTGAAGACCGAATGGGCGAACACCTCTACCGGTGCAATTGGGGACGTGAA [ 1201 1260] RANDOM GAGCTGGGGGTAGTATCCAGTCGTTTTTCCTG---AAGGACTTGATATC-AC-GCTCC-T MSV-RE[N2AR3] GAGAGGAGCTTTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-ATTTACTGC-CCAT MSV-RE[N2AR4] GAGAGGAGCTTTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-ATTTACTGC-CCAT MSV-RE[N2AR6] GAGAGGAGCTTTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-ATTTACTGC-CCAT MSV-RE[N2AR2] GAGAGGAGCTTTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-ATTTACTGC-CCAT MSV-RE[N2AR5] GAGAGGAGCTTTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-ATTTACTGC-CCAT MSV-RE[N2AR8] GAGAGGAGCTTTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-ATTTACTGC-CCAT MSV-RE[SP1R10] GAGAGGAGCTTTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-ATTTACTGC-CCAT MSV-RE[SP2R13] GAGAGGAGCTTTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-ATTTACTGC-CCAT MSV-RE[SP2R11] GAGAGGAGCTTTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-ATTTACTGC-CCAT MSV-RE[SP2R7] GAGAGGAGCTTTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-ATTTACTGC-CCAT MSV-RE[SP2R12] GAGAGGAGCTTTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-ATTTACTGC-CCAT MSV-KE[SA] GAGAGGAGCTTTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-ATTTACTGC-CCAT MSV-KE[Kom] GAGAGGAGCTCTGTACATGGTCATTGCCCCAGGCAATGGCCTTAC-TTTTACTGC-CCAT MSV-KE GAGAGGAGCCCTGTACATGGTCATTGCCCCCGGCAATGGTCTTAC-ATTTACTGC-CCAT MSV-KE[NG] GAGAGGAGCGCTGTACATGGTCATTGCCCCCGGCAATGGCCTTAC-TTTTACTGC-CCAT SetSV GAGAGGTGCTCTGTATCTAGTCATTGCCCCCGGCAATGGTATTAC-GTTTACTGC-CCAT SSEV-[BS] GAAGGGTGCGTTGTACCTGGTCATTGCCCCTGGCAACGGTCTAGA-GTTTACCTG-CCAT SSEV-[Giz] GAAGGGTGCGTTGTACCTGGTCATTGCCCCTGGCAATGGTCTAGA-GTTTACCTG-CCAT SSEV-[Man] GAAGGGTGCGTTGTACCTGGTCATTGCCCCTGGCAATGGTCTAGA-GTTTACCTG-CCAT SSEV-[Asw] GAAGGGTGCGTTGTACCTGGTCATTGCCCCTGGCAATGGTCTAGA-GTTTACCTG-CCAT SSV-ZA GAAGGGTGCCCTGTATATTGTAATTGCCCCTGGCAATGGGTTAGA-TTTTACGGT-GCAT SSREV GAAGGGTGCCCTCTATATTGTAATTGCCCCAGGCAATGGACTCGA-TTTTACGGT-GCAT PanSV-KE GAAGGGCGGCTTCTACATAGTCATTGCGCCCGGGAACG---TAGA-GTTCACGTG-TCAC PanSV-Kar GAAGGGCGCCTTGTACATTGTCATTGCGCCTGGAAACGGGCTTGA-GTTTACGGT-TCAC DSV GAAGGGTGCCCTGTACTTTGTAATAGCCCCTGGCTCGGGCATAGA-TTTTACACT-GTTC CSMV GAGCGGAGCTCTTTACCTAGTCATGGCTCCGGCTAACGGAGCTGT-CTTTGTAGC-CCGC WDV-[SE] GAAGGGAGCACTGTATCTTATTAGCAGTACTCGTGGTGGTGTTACTGGTGATAGTGCCTC WDV-[FR] GAAGGGAGCACTGTATCTCATTAGCAGTACTCGTGGTGGTGTTACTGGTGACAGTGCCTC WDV-[CZ] GAAGGGAGCACTGTATCTCATTAGCAGTACTCGTGGTGGTGTCACTGGTGACAGTGCCTC TYDV GGAAGGAGCACTATACCTTGTATGTGCTCCTGGTGGTGGTGCTACTG-TAAGAGTT---- BeYDV GGAAGGAGCCCTTTACATTGTTGGTGCTCCTTCCCAAAAGTCCGATG-TATATGTA---- MiSV-[JP] GAAGGGTGCGTTGTACCTGTGTGCCAATACCCGGCAGATGCCTGCTGGTGACTCAGTCAC MiSV GAAGGGTGCGTTGTACCTGTGTGCCAATACCCGGCAGATGCCTGCTGGTGACTCAGTCAC [ 1261 1320] RANDOM GGGCTTTACCTCGTGCAGAGGCCCCTAACTCGTAGGT-GTAGCTTACTAACTGACTCATA MSV-RE[N2AR3] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-RE[N2AR4] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-RE[N2AR6] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-RE[N2AR2] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-RE[N2AR5] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-RE[N2AR8] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-RE[SP1R10] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-RE[SP2R13] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-RE[SP2R11] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-RE[SP2R7] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-RE[SP2R12] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-KE[SA] GGGCAGACCCGCCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-KE[Kom] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-KE GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT MSV-KE[NG] GGGCAGACCCGTCTGTACTTTAAGAGTGTTGGCAACCAGTAAT-------------GAAT SetSV GGGCAGACACGTCTGTACTTTAAGAGTGTTGGCAACCAGTGAT-------------GAAT SSEV-[BS] GGGCAGGCCCGTCTGTACTTCAAATCAGTTGGGAATCAGTGATTCCC-----TACAGAAT SSEV-[Giz] GGGCAGGCCCGTCTGTACTTCAAATCAGTTGGGAATCAGTGATTCCC-----TACAGAAT SSEV-[Man] GGGCAGGCCCGTCTGTACTTTAAATCAGTTGGGAATCAGTGATTCCC-----TACAGAAT SSEV-[Asw] GGGCAGGCCCGTCTGTATTTCAAATCAGTTGGGAATCAGTGATTCCC-----TACAGAAT SSV-ZA GGTAATGCCCGTTTGTATTTCAAGTCAGTCGGGAACCAGTAGGTCCTGAG--TTTAATAA SSREV GGAAATGCCCGTTTGTACTTTAAGAGCGTTGGTAATCAGTGATTGCCAG----CCAATGT PanSV-KE GGCCAGTGCCGTCTGTACTTTAAGTCTGTTGGGAATCAGTGATTCCAC----CGCAATTT PanSV-Kar GGCCAGTGCCGTCTGTACTTTAAGTCAGTTGGTAATCAGTGATTACCA----CATCAATT DSV GGTACCTGCCGTATGTACTTTAAGAGTGTGGGCAACCAGTAAGGTT---G--TCCAGAAT CSMV GGCAATGTCCGCGTGTATTTTAAGTCTGTTGGGAATCAGTGATTCCCCAGACTTCATTTT WDV-[SE] TACGGCGTTTGATGTTGT-ATGTGCCTATACGCA-CGCGTGTTATTTCAAAGCCATCGGC WDV-[FR] TACGGCGTTTGATGTTGT-ATGTGCCTATACGCA-CGCGTGTTATTTCAAAGCCATCGGC WDV-[CZ] TACGGCGTTTGATGTTGT-ATGTGCCTATACGCA-CGCGTGTTACTTCAAAGCCATCGGC TYDV ---GGCGGTAGATTCCGC-ATGT--------------------ATTTCAAATCAGTTGGC BeYDV ---AATGGTTATTTCCGA-GTGT--------------------ACTTCAAGTCAGTTGGA MiSV-[JP] CACGAGTTGTACCACCATGATGCAAGGGTCTACC-CGATTGT-ACTTCAAAGTGCTGGGG MiSV CACGAGTTGTACCACCATGATGCAAGGGTCTACC-CGATTGT-ACTTCAAAGTGCTGGGG [ 1321 1380] RANDOM CAATGATAGAGAGCTGGCATTGGGGGACAATGTGAAATACAACGTCGCGATAATTTACCA MSV-RE[N2AR3] AAA--A--CTCCGTTTTTATTAT-ATCTCATGAATGCTGAAAGCTTACATTAATATGTCG MSV-RE[N2AR4] AAA--A--CTCCGTTTTTATTAT-ATCTCATGAATGCTGAAAGCTTACATTAATATGTCG MSV-RE[N2AR6] AAA--A--CTCCGTTTTTATTAT-ATCTCATGAATGCTGAAAGCTTACATTAATATGTCG MSV-RE[N2AR2] AAA--A--CTCCGTTTTTATTAT-ATCTCATGAATGCTGAAAGCTTACATTAATATGTCG MSV-RE[N2AR5] AAA--A--CTCCGTTTTTATTAT-ATCTCATGAATGCTGAAAGCTTACATTAATATGTCG MSV-RE[N2AR8] AAA--A--CTCCGTTTTTATTAT-ATCTCATGAATGCTGAAAGCTTACATTAATATGTCG MSV-RE[SP1R10] AAA--A--CTCCGTTTTTATTAT-ATTTCATGAATGCTGAAAGCTTACATTAATATGTCG MSV-RE[SP2R13] AAA--A--CTCCGTTTTTATTAT-ATTTCATGAATGCTGAAAGCTTACATTAATATGTCG MSV-RE[SP2R11] AAA--A--CTCCGTTTTTATTAT-ATTTCATGAATGCTGAAAGCTTACATTAATATGTCG MSV-RE[SP2R7] AAA--A--CTCCGTTTTTATTAT-ATTTCATGAATGCTGAAAGCTTACATTAATATGTCG MSV-RE[SP2R12] AAA--A--CTCCGTTTTTATTAT-ATTTCATGAATGCTGAAAGCTTACATTAATATGTCG MSV-KE[SA] AAA--A-ACGCCCGTTTTATTAT-ATCTGATGAATGCTGAAAGCTTACATTAATATGTCG MSV-KE[Kom] AAA--A-ACTCCCGTTTTATTAT-ATTTGATGAATGCTGAAAGCTTACATTAATATGTCG MSV-KE AAA--A-ACTCCCGTTTTATTAT-ATCTGATGAATGCTGAAAGCTTACATTAATATGTCG MSV-KE[NG] AAA--A--CGCCGTTTTTATTAT-ATCTGATGAATGCTGAAAGCTTACATTAATATGTCG SetSV AAA--A--CTGCG-TTTTATTAT-ATCTGATGAATGCTGAAAGCTTACATTGATATGTCG SSEV-[BS] -AATAA-AA-CAAGTTTTATAAT---TCCATTGATATTG--GACGCAGTACAATACAGAA SSEV-[Giz] -AATAA-AA-CAAGTTTTATAAT---TCCATTGATATTG--GACGAAGTACAATACAGAA SSEV-[Man] -AATAA-AA-CAAGTTTTATAAT---TCCATTGATATTG--GACGAAGTACAATACAGAA SSEV-[Asw] -AATAA-AA-CAAGTTTTATAAT---TTCATTGATATTG--GACGAAGTACAATACAGGA SSV-ZA -AATTC-CATTTTATTTCATGATAAGTCTAGCCTTGTCTCTGACAAGGTGGGTTACACAG SSREV -AATAA-AAACAT-TATTATTATGATT---ATCACGCCGCAGGC--GTTACATTACATAG PanSV-KE -AATAA-AA-CAAGTTTTAT-----------TCATAT---GAACGGAGTTCA-TACAT-- PanSV-Kar -AATAA-AA-CAAGTTTTAT-----------TCAAA----GAGCGAAGCTCA-TACAT-- DSV GAATAA-AAACTAGTTTT----TA---TTATTGA--TTGCGAAGCAATTGCATTACA-AA CSMV CAATAA-AC--------TGTGAGAGTTTGCT---TGCCAAACA---ACATAATTTCATT- WDV-[SE] ATTCAGTAATAAAATAATATTTT-ATTTATCTCATGTCATTCGATTACAGAGGCTCGGC- WDV-[FR] ATTCAGTAATAAAATAATATTTT-ATTTATCTCATGTCATTCGATTACAGAGGCTCGGC- WDV-[CZ] ATTCAGTAATAAAATAATATTTT-ATTTATCTCATGTCATTCGATTACAGAGGCTCGGC- TYDV AATCAATAA--AAATGTCGTTAT-TTTGATTTCATATTAAT--------GAGCTTCAG-- BeYDV AATCAATAA--AATGATTATT-T-TATGAATATATTTCATT--------GTGCA--AG-- MiSV-[JP] AACCAGTAATAA--TAAAAACTT-ATTTATTATATATTGCAAACCTGTGGA-------T- MiSV AACCAGTAATAA--TAAAAACTT-ATTTATTATATATTGCAAACCTGTGGA-------T- [ 1381 1440] RANDOM CTTGAGTACCGGCATCTTAAAATCACATCATACCGACAA-GTGCTGGTGACAGATAGAAT MSV-RE[N2AR3] TGCGA----TGGC--ACGAAAAA--C-ACACACAATCAATACAGGGGGGT--AGTCG--- MSV-RE[N2AR4] TGCGA----TGGC--ACGAAAAA--C-ACACACAATCAATACAGGGGGGT--AGTCG--- MSV-RE[N2AR6] TGCGA----TGGC--ACGAAAAA--C-ACACACAATCAATACAGGGGGGT--AGTCG--- MSV-RE[N2AR2] TGCGA----TGGC--ACGAAAAA--C-ACACACAATCAATACAGGGGGGT--AGTCG--- MSV-RE[N2AR5] TGCGA----TGGC--ACGAAAAA--C-ACACACAATCAATACAGGGGGGG--AGTCG--- MSV-RE[N2AR8] TGCGA----TGGC--ACGAAAAA--C-ACACACAATCAATACAGGGGGGG--AGTCG--- MSV-RE[SP1R10] TGCGA----TGGC--ACGAAAAA--C-ACACACAATCAATACAGGGGGGT--AGTCG--- MSV-RE[SP2R13] TGCGA----TGGC--ACGAAAAA--C-ACACACAATCAATACAGGGGGGT--AGTCG--- MSV-RE[SP2R11] TGCGA----TGGC--ACGAAAAA--C-ACACACAATCAATACAGGGGGGT--AGTCG--- MSV-RE[SP2R7] TGCGA----TGGC--ACGAAAAA--C-ACACACAATCAATACAGGGGGGT--AGTCG--- MSV-RE[SP2R12] TGCGA----TGGC--ACGAAAAA--C-ACACACAATCAATACAGGGGGGT--AGTCG--- MSV-KE[SA] TGCGA----TGGC--ACGAAAAA-AC-ACACGCAATCAATACAGGGGGGT--AGTCG--- MSV-KE[Kom] TGCGA----TGGC--ACGAAAAA-AC-ACACGCAAACAATACAGGGGGGT--AGTCG--- MSV-KE TGCGA----TGGC--ACGAAAAA-AC-ACACGCAATCAATACAGGGGGGT--AGTAG--- MSV-KE[NG] TGCGA----TGGC--ACGAAAAA--C-ACACACAATCAATACAGGGGGGT--AGTCG--- SetSV TGGGA----TGAC--ACGAAAA-----ACACACAAACAATACAGGGCGGTCAGGACAAA- SSEV-[BS] TACAATGTCTG-CAGATGTGCAG-AC--GACA-ACATTAAACT----GGTT---TTGTGT SSEV-[Giz] TACAATGTCTG-CAGATGTGCAG-AC--GACA-ACATTAAACT----GGTT---TTGTGT SSEV-[Man] TACAATGTCTG-CAGATGTGCAG-AC--GACA-ACATTAAACT----GGTT---TTGTGT SSEV-[Asw] TACAATGTCTG-CAGATGTGCAG-AC--GACA-ACATAAAACT----GGTT---TTGTGT SSV-ZA GCAGCCGCTTGGCTGACAAAAAC-ACTAAACTGATACAA-AC--GGCGGC-AGATCGTAG SSREV TCCGCAGATAGGCGGACAGGAAG---CAAACACATACAATACTCGGCGGCCAGATCGT-G PanSV-KE TACATAGTC-GGCAT-TAAGACG-ACGAAA-AAACAC---ACACA-----TAG------T PanSV-Kar TACATAGTC-AGCAGATATGCTG-AC-AGA-AAACAC---ACACA-----TAG------T DSV GACGCCGTCAAGCG-----GCAA-CTAAAACACACAT--GACCCCGCGCCGGGCTTAAGA CSMV CATAACGA-TGGCGCA-GTATGC-GCAATACATTTAAAAGA-AGGGCGGACAGGACAAA- WDV-[SE] TACGAGCAAAGACAAACCAAAT--ATAACAAACAACAACCCTTACACAATGACATCGGA- WDV-[FR] TACGAGCAAAGACAAACCAAATT-ATAACAAACAACAACCCTTACACAATGACATCGGA- WDV-[CZ] TACGAGCAAAGACAAACCAAATT-ATAACAAACAACAACCCTCACACAATGACATCGGA- TYDV TGTAGAGAAATTCAAATCTTATT-AATAAAAACCCGGA---ATACAAAAACACA-CGAA- BeYDV TAGATAGAAATT-ACATAT-GTT-ACATAACACACGAA---ATAAACAAAAAAA-CACA- MiSV-[JP] TACATGATAATGTGAGC-GCATT-ATGCGCGACAACAAACT-CAAGAAATTACAT--AA- MiSV TACATGATAATGTGAGC-GCATT-ATGCGCGACAACAAACT-CAAGAAATTACAT--AA- [ 1441 1500] RANDOM GACTCTACCTCTT--TGGCCAAAGTTGAAAACGATACCCTACCAACAAGTTTCTAGTCAC MSV-RE[N2AR3] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAAAACATCGAAA-- MSV-RE[N2AR4] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAAAACATCGAAA-- MSV-RE[N2AR6] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAAAACATCGAAA-- MSV-RE[N2AR2] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAAAACATCGAAA-- MSV-RE[N2AR5] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAAAACATCGAAA-- MSV-RE[N2AR8] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAAAACATCGAAA-- MSV-RE[SP1R10] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAAAACATCGAAA-- MSV-RE[SP2R13] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAAAACATCGAAA-- MSV-RE[SP2R11] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAAAACATCGAAA-- MSV-RE[SP2R7] ---GCGGGCGGCTAAGGGTG-------------GTGCTCCGCGGGCAAAACATCGAAA-- MSV-RE[SP2R12] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAAAACATCGAAA-- MSV-KE[SA] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAAAACATCGAAA-- MSV-KE[Kom] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAGAACATCGAAA-- MSV-KE ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAAAACATCGAAA-- MSV-KE[NG] ---GCGGGCGGCTAAGGGTG-------------GTGCTCGGCGGGCAGAACATCGAAA-- SetSV ---GCAGGCGGCGTATGGGC-------------GCGCCCG--GGGCAACATCTTAAAA-- SSEV-[BS] GTCGCGAGGGGG----AACCCGGAG-----CACGCTCCCAAAACACCCAACAC--ACAC- SSEV-[Giz] GTCGCGAGGGGG----AACCCGGAG-----CACGCTCCCAAAACACCCAACAC--ACAC- SSEV-[Man] GTCGCGAGGGGG----AACCCGGAG-----CACGCTCCCAAAACACCCAACAC--ACAC- SSEV-[Asw] GTCGCGAGGGGG----AACCCGGAG-----CACGCTCCCAAAACACCCAACAC--ACAC- SSV-ZA GCGGCTAAGGGATAGGAATATGAAAAAAAAAACACATCCAAA-CTGACATTATTGAAATT SSREV GCGGCTAAGGGATAGCG-CA-GGAAAAAAACACACAAAAAAAACTGACATTATTGAAATT PanSV-KE GCAGCCTCGGGCTAAAGACC--GAG----------TCTCAAACGACCCAACTTAAAAACA PanSV-Kar GCAGCCTCGGGCTAAAGACC--GAG----------TCTCAAACGACCCAACTTAAAAACA DSV CCGGCTCGCTGG-GTCACCCTGCGATACATAAAATTAAAAAAAAACACAGATCTGAATTA CSMV --GGCGGGCGGCTAAGGG-------------AAGC-CGCAAGGGGC--AACACC---ACA WDV-[SE] --AAACGAAATACAACACCCTGAGATATTACATTTATAGAAACTGTACGCCGTCCGCGCT WDV-[FR] --AAACGAAATACAACACCCTGAGATATTACATTTATAGAAACTGTACGCCGTCCGCGCT WDV-[CZ] --AAACGAAATACAACACCCTGAGATATTACATTTATAGAAACTGTACGCCGTCCGCGCT TYDV --AACGAAAAAAAGACACCTT-ACA-ATCATT-----ACACACTATATACC-CTCCTATG BeYDV --ATCCAAAACAA-ACACCCC-AAACAAAATA-----ACACTATATATATC-CTCGTATG MiSV-[JP] --ATTTGGGGGGTAGGGGCAAAGCAGGCGGCTATGGGCGCGCCCGCGGGCAACACAC-TT MiSV --ATTTGGGGGGTAGGGGCAAAGCAGGCGGCTATGGGCGCGCCCGCGGGCAACACAC-TT [ 1501 1560] RANDOM GGTCTACATTTAT---ACTTACATCGGATGAGCCGTAATCAGCGCGACACATTGATAGGG MSV-RE[N2AR3] AATCAAGATGTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCAGG-GGGAGAAT MSV-RE[N2AR4] AATCAAGATGTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCAGG-GGGAGAAT MSV-RE[N2AR6] AATCAAGATGTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCAGG-GGGAGAAT MSV-RE[N2AR2] AATCAAGATGTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCAGG-GGGAGAAT MSV-RE[N2AR5] AATCAAGATGTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCAGG-GGGAGAAT MSV-RE[N2AR8] AATCAAGATGTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCAGG-GGGAGAAT MSV-RE[SP1R10] AATCAAGATGTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCACG-GGGAGAAT MSV-RE[SP2R13] AATCAAGATGTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCACG-GGGAGAAT MSV-RE[SP2R11] AATCAAGATGTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCACG-GGGAGAAT MSV-RE[SP2R7] AATCAAGATGTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCACG-GGGAGAAT MSV-RE[SP2R12] AATCAAGATGTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCACG-GGGAGAAT MSV-KE[SA] AATCAAGATCTATATGAATTACACTTCCT---CCGTAGGAGGAAGCACAGG-GGGAGAAT MSV-KE[Kom] AATCAAGATCTATATGAATTACACTTCCT---CCGTAGGAGGAAGCACAGG-GGGAGAAT MSV-KE AATCAAGATCTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCAGG-GGGAGAAT MSV-KE[NG] AATCAAGATCTATCTGAAT-GTACTGCCT---CCGTAGGAGGCAGCTCAGG-GGGAGAAT SetSV AAA-AACCGATAATAGAATTAAACTTCCT---CCGTAGGAGGAAGCTCAGG-GGGAGAAT SSEV-[BS] -----ACACCCAACTGAAGTTTATTGAACA---TGCAGCCGCCGGCCTAAGCAGGCTTGT SSEV-[Giz] -----ACACCCAACTGAAGATTATTGAACA---TGCAGCCGCCGGCCTAAGCAGGCTTGT SSEV-[Man] -----ACACCCAACTGAAGATTATTGAACA---TGCAGCCGCCGGCCTAAGCAGGCTTGT SSEV-[Asw] -----ACACCCAACTGAAGATTATTGAACA---TGCAGCCGCCGGCCTAAGCAGGCTTGT SSV-ZA GGTCGGCGCTCAGACTTCGCTAGAAGGATGGGCTGTAGCTGACACCGCTGGCAGGCT-GA SSREV GGTCGGCGCTCAGACCCCGATAGGGGGATGGGCTGTAGCTGACACCGCGGGCCCGCC-GA PanSV-KE AATCAAAACA-AGCATGATATTATTTAA-A---TGCTGCCGCCGGCTTCTCCTGTCTTGT PanSV-Kar AATCAAAACA-AGCATGATATTATTAAATA---TGCAGCCGCCGGCTTAAGCAGGAGTGA DSV CGCCGGCGCGTCGTCGAGCGAAGCGAGTGACGCTGTAGCTGGC-CCTTCTGCGTAGCTGA CSMV TCCCAAGAATGAGTTTTGGAATA-TGC---AGCCGCTGGCTTCACGCTATTCCGAAGGAA WDV-[SE] AGGACAGTCACTGCGAAGCAGTGACGTCTTCGCCG------GAGGCGAACGAGTAGTTGA WDV-[FR] AGGACAGTCACTGCGAAGCAGTGACATCTTCGCCG------GAGGCGAACGAGTAGTTGA WDV-[CZ] AGGACAGTCACTGCGAAGCAGTGACATCTTCGCCG------GAGGCGAACGAGTAGTTGA TYDV AGGAGAGGCAC-GTT---CAGTGAC-------TCG------ACGATTCAGGAGCA----A BeYDV AGGAGAGGCAC-GTT---CAGTGAC-------TCG------ACGATTCCCGAGCA----A MiSV-[JP] AAAAAAAACACAACAATAGATTCACTCTTCGGCCG------GCAG-----GA-----CGT MiSV AAAAAAAACACAACAATAGATTCACTCTTCGGCCG------GCAG-----GA-----CGT [ 1561 1620] RANDOM A------TTCGGCGAATTGGATTTAGTACCAGTAGAAGGAAAATTCCATATGT----GTC MSV-RE[N2AR3] ACCATTTCTCCCCTGGCGACATAATGTAAATGGTGCAGTTTGCCTCGAAATACTCCAGCT MSV-RE[N2AR4] ACCATTTCTCCCCTGGCGACATAATGTAAATGGTGCAGTTTGCCTCGAAATACTCCAGCT MSV-RE[N2AR6] ACCATTTCTCCCCTGGCGACATAATGTAAATGGTGCAGTTTGCCTCGAAATACTCCAGCT MSV-RE[N2AR2] ACCATTTCTCCCCTGGCGACATAATGTAAATGGTGCAGTTTGCCTCGAAATACTCCAGCT MSV-RE[N2AR5] ACCATTTCTCCCCTGGCGACATAATGTAAATGGTGCAGTTTGCCTCGAAATACTCCAGCT MSV-RE[N2AR8] ACCATTTCTCCCCTGGCGACATAATGTAAATGGTGCAGTTTGCCTCGAAATACTCCAGCT MSV-RE[SP1R10] ACCATTTCTCCCCTGGCGACATAATGTAAATGGTGCAGTTTGCCTCGAAATACTCCAGCT MSV-RE[SP2R13] ACCATTTCTCCCCTGGCGACATAATGTAAATGGTGCAGTTTGCCTCGAAATACTCCAGCT MSV-RE[SP2R11] ACCATTTCTCCCCTGGCGACATAATGTAAATGGTGCAGTTTGCCTCGAAATACTCCAGCT MSV-RE[SP2R7] ACCATTTCTCCCCTGGCGACATAATGTAAATGGTGCAGTTTGCCTCGAAATACTCCAGCT MSV-RE[SP2R12] ACCATTTCTCCCCTGGCGACATAATGTAAATGGTGCAGTTTGCCTCGAAATACTCCAGCT MSV-KE[SA] ACCACTTCTCCCCCGGCGACATAATGTAAATGATGCAGTTTGCCTCGAAATACTCCAGCT MSV-KE[Kom] ACCACTTCTCCCCCGGCGACATAATGTAAATGACGCAGTTTGCCTCGAAATACTCCAGCT MSV-KE ACCACTTCTCCCCCGGCGACATAATGTAAATGATGCAGTTTGCCTCGAAATACTCCAGCT MSV-KE[NG] ACCATTTCTCCCCCGGCGACATAATGTAAATGATGCAGTTTGCCTCGAAATACTCCAGCT SetSV ACCATTTCTCCCCCGGCTGCATTACATATATCATGCAGTTTGCTTCGAAATACTCCAGCT SSEV-[BS] AGAACTTCTCGCCTGCTGTCATAATGTATATGACCGCGTTTGCCTCGAAGTACTCCCGCT SSEV-[Giz] AGAACTTCTCGCCTGCTGTCATAATGTATATGACCGCGTTTGCCTCGAAGTACTCCCGTT SSEV-[Man] AGAACTTCTCGCCTGCTGTCATAATGTATATGACCGCGTTTGCCTCGAAGTACTCCCGTT SSEV-[Asw] AGAACTTCTCGCCTGCTGTCATAATGTATATGACCGCGTTTGCCTCGAAGTACTCCCGTT SSV-ZA AGAACCGCTCTCCCGGTTCTAGCATGTATGTCTCACAGTTTGCATTGAAATAGTCCTGCT SSREV AGAAGCGCTCGCCTTCTTCCATTATGTAGACGACGCAGTTCTGATGAAAGTAGTCCAGCT PanSV-KE AGAATTTCTCTCCAGGCAGGAGGATGTATTGGTCGCAGTTTGCCTCGAAGTACTCCACGT PanSV-Kar ACCACTTCTCTCCTGCCTGCATTACGTAGATTTCGCAGTTTGCGTAGAAGTAGTCATACT DSV AGAACCTTTCCCCTTCAGTCATTTTGTAAATGACGGTATTGGCTTCGAAGTACGACAGCT CSMV TGAAGGTTTCCCCTGGGAGAAGGTGATACACCACGGCGTTGCCGTGAAACCAGTCGACCT WDV-[SE] TGAACGTCTCGCCTTCATACATGTAGTGAACAACAGTGTTAGAGTACATGTAATCCGACT WDV-[FR] TGAACGTCTCGCCTTCATACATGTAGTGAACAACAGCGTTAGAGTACATGTAATCCGACT WDV-[CZ] TGAATGACTCGCCTTCATACATGTAGTGAACAACAGCGTTAGAGTACATGTAATCCGACT TYDV AAAATGTTTCCGCCGCATACATAAAATGCGTAATACAATTGGCTTCAAAGTATTCAATCT BeYDV AAAAAGTCTCCCCGTCACACATATAGTGGGTGACGCAATTATCTTCAAAGTAATCCTTCT MiSV-[JP] AGAACTTCTGTCCTTCGTACATGTAATGTACGTGGGCGTTTGCGTACAGGTACTCCACTT MiSV AGAACTTCTGTCCTTCGTACATGTAATGTACGTGGGCGTTCGCGTGCAGGTACTCCACTT [ 1621 1680] RANDOM GGGCGGCACACATAGTTCCTATTCACTCGTTATCAGCATC--TTGTAACTA--ATAGGCT MSV-RE[N2AR3] GCCCTGGAGTCATTTCTTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-RE[N2AR4] GCCCTGGAGTCATTTCTTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-RE[N2AR6] GCCCTGGAGTCATTTCTTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-RE[N2AR2] GCCCTGGAGTCATTTCTTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-RE[N2AR5] GCCCTGGAGTCATTTCTTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-RE[N2AR8] GCCCTGGAGTCATTTCTTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-RE[SP1R10] GCCCTGGAGTCATTTCTTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-RE[SP2R13] GCCCTGGAGTCATTTCTTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-RE[SP2R11] GCCCTGGAGTCATTTCTTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-RE[SP2R7] GCCCTGGAGTCATTTCTTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-RE[SP2R12] GCCCTGGAGTCATTTCTTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-KE[SA] GCCCTGGAGTCATTTCCTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-KE[Kom] GCCCTGGAGTCATTTCCTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-KE GCCCTGGAGTCATTTCCTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT MSV-KE[NG] GCCCTGGAGTCATTTCCTTCATCCAATCTTCATCCGAGTTGGCGAGGATTATTGTAGGCT SetSV GCCCTGGAGTCATTTCCTTCATCCAATCTTCATCCGAGTTGGCGAGAATGATAGTAGGTT SSEV-[BS] GTCCGGGAGTCATGACCGTCAGCCAGTCCTCATCCTCGTTGGCTAGGATTATTGATGGAA SSEV-[Giz] GTCCGGGAGTCATCACCCTCAGCCAGTCCTCATCCTCGTTGGCTAGGATTATTGATGGAA SSEV-[Man] GTCCGGGAGTCATCACCGTCAGCCAGTCCTCATCCTCGTTGGCTAGGATTATTGATGGAA SSEV-[Asw] GTCCGGGAGTCATCACCGTCAGCCAGTCCTCATCCTCGTTGGCTAGGATTATTGATGGAA SSV-ZA GGGCAGGCGTCATGTCTCTCAACCAGTCCTCATCCTCATTGGCTAGCACTATAGTGGGGA SSREV GCCCTGGACTCATTACCTTCATCCAGTCTTCATCCTCGTTGGCAAGAACAATTGTGGAGA PanSV-KE GCGCCGGAGTCATGTCCTTCAGCCAGTCCTCATCCTCGTTGGCGAGGATGATAGTTGGAA PanSV-Kar GCGCCGGAGTCATGTCCTTCAGCCAGTCCTCATCCTCGTTGGCGAGGATGATAGTTGGTA DSV GCGCTGGAGTCATGTCTTTCATCCAATCTTCATCCGGATTGGTGAGGATTATTGATGGTA CSMV GTTGGGTCGACATCGACTGCAGCCAGTCTTCATCCTCGTTTACGAGGATAATACATGG-- WDV-[SE] GTTCGGGAGTCATATCCTTGAGCCAATCTTCGTCTGGATTAACTAAAATGATGCAAGGTA WDV-[FR] GTTCGGGAGTCATATCCTTGAGCCAATCTTCGTCTGGATTAACTAAAATGATGCAAGGTA WDV-[CZ] GTTCGGGAGTCATATCTTTGAGCCAATCTTCGTCTGGATTAACTAAAATGATGCAAGGTA TYDV GAGCGGGAGACATATTCTTCAGCCAGTCTTCATCGTCGTTACATAGTATAATACATGGCA BeYDV GTTGACTTGTCATTGATAACATCCAGTCTTCGTCAGGATTCCAAAGAATTATAGAAGGGA MiSV-[JP] GTGCAGGTTTCATGTCCTTGATCCAGTCTTCGTCGTCATTGGTTAGAATGATGGACGGGA MiSV GTGCAGGTTTCATGTCCTTGATCCAGTCTTCGTCGTCATTGGTTAGAATGATGGACGGGA [ 1681 1740] RANDOM T-CACATATT-TACATTTTAGTTTGTCCTTCGAA---AAAA--GATAGCGAGATTCTGTT MSV-RE[N2AR3] TAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTGACAATGAAATCTTTCT MSV-RE[N2AR4] TAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTGACAATGAAATCTTTCT MSV-RE[N2AR6] TAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTGACAATGAAATCTTTCT MSV-RE[N2AR2] TAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTGACAATGAAATCTTTCT MSV-RE[N2AR5] TAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTGACAATGAAATCTTTCT MSV-RE[N2AR8] TAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTGACAATGAAATCTTTCT MSV-RE[SP1R10] TAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTGACAATGAAATCTTTCT MSV-RE[SP2R13] TAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTGACAATGAAATCTTTCT MSV-RE[SP2R11] TAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTGACAATGAAATCTTTCT MSV-RE[SP2R7] TAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTGACAATGAAATCTTTCT MSV-RE[SP2R12] TAGACTTCTTCTGCACCTTCTTCTTCTTACCATACTTGGGGTTGACAATGAAATCTTTCT MSV-KE[SA] TAGACTTCTTCTGCACCTTTTTCTTCTTACCATACTTGGGGTTTACAATGAAATCCCTCT MSV-KE[Kom] TAGACTTCTTCTGCACCTTTTTCTTCTTACCATACTTGGGGTTTACAATGAAATCCCTCT MSV-KE TAGACTTCTTGTGCACCTTCTTCTTCTTACCATATTTGGGGTTTACAATGAAATCCCTCT MSV-KE[NG] TAGACTTCTTCTGCACCTTTTTCTTTTTACCATACTTGGGGTTTACAATGAAATCCCTCT SetSV TAGACTTCATCTGAACCTTCTTCTTCTTCCCGTATTTAGGATTTACAACGAATTCTTTTT SSEV-[BS] TGCTCCTGGAAGCTACCTTCTTCTTCTTACCGTACTTCGGGTTGACGACGTACTCTTTCT SSEV-[Giz] TGCTGTTGGAAGCTACCTTCTTCTTCTTACCGTACTTCGGGTTGACGACGTACTCTTTCT SSEV-[Man] TGCTTCTGGAAGCTACCTTCTTCTTCTTACCGTACTTCGGGTTGACGACGTACTCTTTCT SSEV-[Asw] TGCTCTTAGAAGCTACCTTCTTCTTCTTACCGTACTTCGGGTTGACGACGTACTCTTTCT SSV-ZA TGGATTTACTAGCTACTTTCTTACGCTTGCCGTACTTTGGATTTACAATATAATCCTTCT SSREV TGCTTTTCTTGGCTACTCTCCGTTTCTTCCCATACTTGGGATTAACGACGTAGTTCTCTT PanSV-KE TGCTCTTGGATGCTACCTTCCGGCGTTTCCCGTACTTGGGATTGACTATGTAGTCTTTTT PanSV-Kar TGCTCTTTGAGGCCACCTTCCGTCTCTTCCCGTACTTCGGGTTCACTATGTAGTCTTTTT DSV TGGATTTAGAAGCAACACGCTTCTTTTTACCATACTTAGGGTTGACGACGTATTCTTTCT CSMV -AATCCCGTTGGGGATTCTTTTCTTCTTCCCGTACTTGGGGTTTACCGTCAGGTCATACT WDV-[SE] T---TCCACCCCGTATGACCTTTCGCTTACCATATTTTGGATTGACCGTGAAGTCACGCT WDV-[FR] T---TCCACCCCGTATTACTTTTCGCTTACCATATTTTGGATTGACCGTGAAGTCACGCT WDV-[CZ] T---TCCACCCCGTATGACCTTTCGCTTACCATATTTTGGATTGACCGTGAAGTCACGCT TYDV C---TCCTCCCTTTATTTTCTTCTTTTTTCCATACTTAGGGTTGACAGTAAAATCAGACT BeYDV T---CCCACCTTTTATTTTCTTCTTTTTTCCATATTTAGGGTTGACAGTGAAATCAGACT MiSV-[JP] T---TCCCCCAGGGATTTTCTTCTTCTTACCGTATTTGGGATTCACTATGTAGTCACGCT MiSV T---TCCCCCAGGGATTTTCTTCTTCTTACCGTACTTGGGATTCACTATGTAGTCACGCT [ 1741 1800] RANDOM -TCGG--GATTAATCAT-------AGGGATACTAATCATATTGAA-----------AAAT MSV-RE[N2AR3] GGCAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAATGGAATATCGTCTACGATGT MSV-RE[N2AR4] GGCAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAATGGAATATCGTCTACGATGT MSV-RE[N2AR6] GGCAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAATGGAATATCGTCTACGATGT MSV-RE[N2AR2] GGCAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAATGGAATATCGTCTACGATGT MSV-RE[N2AR5] GGCAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAATGGAATATCGTCTACGATGT MSV-RE[N2AR8] GGCAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAATGGAATATCGTCTACGATGT MSV-RE[SP1R10] GGCAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAATGGAATATCGTCTACGATGT MSV-RE[SP2R13] GGCAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAATGGAATATCGTCTACGATGT MSV-RE[SP2R11] GGCAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAATGGAATATCGTCTACGATGT MSV-RE[SP2R7] GGCAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAATGGAATATCGTCTACGATGT MSV-RE[SP2R12] GGCAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAATGGAATATCGTCTACGATGT MSV-KE[SA] GACAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAACGGAATATCATCTACGATGT MSV-KE[Kom] GACAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAACGGAATATCATCTACGATGT MSV-KE GACAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAACGGAATATCATCTACGATGT MSV-KE[NG] GACAGCCAACTAACTGTTTCCAACAAGGACAGAATTTAAACGGAATATCATCTACGATGT SetSV GACAGCCAACCAACTGTTTCCAGCAAGGACAATATTTAAAGGGGATATCATCTACGATGT SSEV-[BS] GGCAGCCAACCAGCTGCTTCCAGCAAGGACAGAACTTGAAGGGGATATCATCTATGATGT SSEV-[Giz] GGCAGCCAACCAGCTGCTTCCAGCAAGGACAGAATTTGAAGGGTATATCATCTATGATGT SSEV-[Man] GGCAGCCAACCAGCTGCTTCCAGCAAGGACAGAACTTGAAGGGTATATCATCTATGATGT SSEV-[Asw] GGCAGCCAACCAGCTGCTTCCAGCAAGGACAGAATTTGAAGGGTATATCATCTATGATGT SSV-ZA GGCAGCCAATCAGTTGCTTCCAGCATGGACAGTACTTGAAGGGTATGTCGTCGATGATGT SSREV GGCAACCAATCAGTTGCTTCCAGCAAGGACAGAACTTGAAGGGGATGTCGTCAATGACGT PanSV-KE GGCAGCCGACGAGTCGTTTCCTGCACGGACAGAACTTGAAGGGAATGTCGTCAACGACAT PanSV-Kar GACAGCCGACGAGCTGCTTCCAGCACGGACAGAACTTGAAGGGAATGTCGTCCACGACAT DSV GACAACCAATCAACTGTTTCCAACAAGGACAGAACTTGAATGGTATGTCATCAATGACAT CSMV GGCTGCCGACGAGTCCCTTCCAACAAGGGACGAACTTGAACGGGATGTCATCAATGATGT WDV-[SE] GAGCCCCGACGAAGCACTTCCAGTTGGGTGTGAACTTGAATGGAATGTCGTCGATGATAT WDV-[FR] GAGCCCCGACGAAGCACTTCCAGTTGGGTGTGAACTTGAATGGAATGTCGTCGATGATAT WDV-[CZ] GAGCCCCGACGAAGCACTTCCAGTTGGGTGTGAACTTGAATGGAATGTCGTCGATGATAT TYDV GGCAACCTATTAATTGCTTCCAGAGTGGGACGAATTTGAAGGGGATGTCGTCGATGACGT BeYDV GGCAACCTATTAATTGCTTCCACAATGGGACGAACTTGAAGGGGATGTCGTCGATGATAT MiSV-[JP] GTGCTCCCACCAGCGCCTTCCACTGCGGCAAGAACTTGAAAGGCACATCGTCGATGACGT MiSV GTGCTCCCACCAGCGCCTTCCACTGCGGCAAGAACTTGAAAGGCACATCGTCGATGACGT [ 1801 1860] RANDOM CAGGGGTTGAAAGGTAGTTT-GCGGTTGGCTAGCCAAACAA-GGGATGCCAACCACGGTC MSV-RE[N2AR3] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-RE[N2AR4] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-RE[N2AR6] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-RE[N2AR2] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-RE[N2AR5] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-RE[N2AR8] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-RE[SP1R10] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-RE[SP2R13] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAAGCAACATTATTTTGCCAGTAATT MSV-RE[SP2R11] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-RE[SP2R7] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-RE[SP2R12] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-KE[SA] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-KE[Kom] TGTAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-KE TGTAGATTGCGTG----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT MSV-KE[NG] TATAGATTGCGT-----CTTCGTTGTATGAAGACCAATCAACATTATTTTGCCAGTAATT SetSV TGTAGATTGTGT-----CTTCGTTGTAGGAAGACCAATCAACATTATTTTGCCAGTAATT SSEV-[BS] TGTAGACTGCTT-----CCTCATCATAGGAAGACCAGTCCACATTATTCTGCCAGTAGTT SSEV-[Giz] TATAGACTGCTT-----CCTCATCATAGGAAGACCAGTCCACATTATTCTGCCAGTAGTT SSEV-[Man] TATAGACTGCTT-----CCTCATCATAGGAAGACCAGTCCACATTATTCTGCCAGTAGTT SSEV-[Asw] TGTAGACTGCTT-----CCTCATCATAGGAAGACCAGTCCACATTATTCTGCCAGTAGTT SSV-ZA TGTATTCTGCGT-----CCTCGTCGTAGGAGGACCAGTCGACGTTGTTCTGCCAGTAATT SSREV TGTAGACTGCGT-----CCTCGTCGTAGCAGGACCAGTCGACGTTGTTTTGCCAGTAATT PanSV-KE TGTACTGAGCTT-----CTTCATCATATGAAGACCAGTCGATATTGTTTTGCCAGTAGTT PanSV-Kar TGTACGCAGCTT-----CTTCATCGTATGAAGACCAGTCGATGTTATTCTGCCAGTAGTT DSV TGAACTGGGCTT-----CCTCGTCATAAGAAGCCCAGTCTACATTATTTTGCCAGTAATT CSMV TGAACTGGGCCTGGCAGTTCCATTCCTCTAGGA--AGTTCACTGAGTGCTGCCAGTAGTG WDV-[SE] TATACTTGGCGT-----TGACGTCATATGTTGTGAAATCAACTAGACTGTTATAATAATT WDV-[FR] TATACTTGGCGT-----TGACGTCATATGTTGTGAAATCAACTAGACTGTTATAATAATT WDV-[CZ] TATACTTGGCGT-----TGACGTCATATGTTGTGAAATCAACTAGACTGTTATAATAATT TYDV TGTAGGTCGCGT-----GGTCATCATAGACAGTGAAGTCGATGGTCCCATTCCAGTAATT BeYDV TATAGGTGGCGT-----GTTCATCGTAGTTGGTGAAGTCGATGGTCCCGTTCCAGTAGTT MiSV-[JP] TGTAGATTGCAT-----CTTTGTCATAGTGTGTGAAGTCTACGGTTGAGTTGTAGTAGTT MiSV TGTAGATTGCAT-----CTTTGTCATAGTGTGTGAAGTCTACGGTTGAGTTGTAGTAGTT [ 1861 1920] RANDOM A-ATGCCCTCAGACCAC-GGTCAATG-----CCCTCAGTCGATGGCTAGCCAAACAAGCA MSV-RE[N2AR3] ATGAACCCCTAGGCTTCTGGCCCAAGTAGACTTTCCTGTTCTTGTTGGCCCGACGATGTA MSV-RE[N2AR4] ATGAACCCCTAGGCTTCTGGCCCAAGTAGACTTTCCTGTTCTTGTTGGCCCGACGATGTA MSV-RE[N2AR6] ATGAACCCCTAGGCTTCTGGCCCAAGTAGACTTTCCTGTTCTTGTTGGCCCGACGATGTA MSV-RE[N2AR2] ATGAACCCCTAGGCTTCTGGCCCAAGTAGACTTTCCTGTTCTTGTTGGCCCGACGATGTA MSV-RE[N2AR5] ATGAACCCCTAGGCTTCTGGCCCAAGTAGACTTTCCTGTTCTTGTTGGCCCGACGATGTA MSV-RE[N2AR8] ATGAACCCCTAGGCTTCTGGCCCAAGTAGACTTTCCTGTTCTTGTTGGCCCGACGATGTA MSV-RE[SP1R10] ATGAACCCCTAGGCTTCTGGCCCAAGTAGACTTTCCTGTTCTTGTTGGCCCGACGATGTA MSV-RE[SP2R13] ATGAACCCCTAGGCTTCTGGCCCAAGTAGACTTTCCTGTTCTTGTTGGCCCGACGATGTA MSV-RE[SP2R11] ATGAACCCCTAGGCTTCTGGCCCAAGTAGACTTTCCTGTTCTTGTTGGCCCGACGATGTA MSV-RE[SP2R7] ATGAACCCCTAGGCTTCTGGCCCAAGTAGACTTTCCTGTTCTTGTTGGCCCGACGATGTA MSV-RE[SP2R12] ATGAACCCCTAGGCTTCTGGCCCAAGTAGACTTTCCTGTTCTTGTTGGCCCGACGATGTA MSV-KE[SA] ATGAACCCCTAGGCTTCTGGCCCAAGTAGATTTTCCGGTTCTTGTTGGGCCGACGATGTA MSV-KE[Kom] ATGAACCCCTAGGCTTCTGGCCCAAGTAGATTTTCCGGTTCTTGTTGGGCCGACGATGTA MSV-KE ATGAACCCCTAGGCTTCTGGCCCAAGTAGATTTTCCTGTTCTTGTTGGGCCGACGATGTA MSV-KE[NG] ATGAACCCCTAGGCTTCTGGCCCAAGTAGATTTTCCGGTTCTTGTTGGGCCGACGATGTA SetSV ATGACGCCCTAAGCTTCTGGCCCATGTAGATTTTCCTGTCCTTGTTGGACCGACGATGTA SSEV-[BS] GTGGCGCCCTAGGCTTCTGGCCCAGGTTGATTTCCCTGTTCTTGTTGGCCCCAGGATGTA SSEV-[Giz] GTGGCGCCCTAGGCTTCTGGCCCAGGTTGATTTCCCTGTTCTTGTTGGCCCAAGGATGTA SSEV-[Man] GTGGCGCCCTAGGCTTCTGGCCCAGGTTGATTTCCCTGTTCTTGTTGGCCCAAGGATGTA SSEV-[Asw] GTGGCGCCCTAGGCTTCTTGCCCATGTTGATTTCCCTGTTCTTGTTGGCCCAAGGATGTA SSV-ZA ATGTCTTCCCAGGCTCCTGGCCCAGGAGGACTTGCCTGTTCTTGTTGGCCCGAGGATGTA SSREV ATGTCTTCCCAGGCTACGGGCCCAAGTAGATTTTCCAGTTCTTGTTGGGCCGAGGATGTA PanSV-KE GTGTCGTCCGAGGCTTCTAGCCCAGGATGTTTTACCTGTCCGTGTTGGGCCGCAGATGTA PanSV-Kar GTGCCGTCCGAGGCTTCTGGCCCAGGATGTTTTACCTGTCCGTGTTGGGCCGACGATGTA DSV ATGTCTACCTAGGCCTCTGGCCCAAGTAGACTTTCCAGTTCTTGTTGGACCGAGGATGTA CSMV ATGAGTTCCAAGACTTCTGGCCCAAGAAGTCTTTCCAGTTCTTGTTGGCCCACAGATGTA WDV-[SE] GTGTGTCCCTAGAGACCTTGCCCAGGAAGTCTTTCCTGTTCTGGTTGGCCCGCAGATGTA WDV-[FR] ATGTGTCCCTAGAGACCTTGCCCAGGAAGTCTTTCCTGTTCTGGTTGGCCCGCAGATGTA WDV-[CZ] GTGTGTCCCTAGAGACCTTGCCCAGGAAGTCTTTCCTGTTCTGGTTGGCCCGCGGATGTG TYDV GTGCCTTCCGAGGCTTCTGGCCCATGTTGTCTTTCCGGTACGACTTGGTCCGCAGATGTA BeYDV GTGTCGCCCGAGACTTCTAGCCCAGGTGGTCTTTCCGGTACGAGTTGGTCCGCAGATGTA MiSV-[JP] GTGCCTCCCGATGTTTCTGGCCCAAGTGGTCTTTCCAGTTCGGCTTGGGCCGCAGATGTA MiSV GTGCCTCCCGATGTTTCTGGCCCAAGTGGTCTTTCCAGTTCGGCTTGGGCCGCAGATGTA [ 1921 1980] RANDOM G-GGCACAGCT-CTAGGTTGATTAGGCCCGCGCTTCC--ATTACTGGTTGCAGCCTC--- MSV-RE[N2AR3] GAGGCTCTGCTTTCTTGATCCTTCATCTGATGAC---TGGATACAGAATCCATCCATTGG MSV-RE[N2AR4] GAGGCTCTGCTTTCTTGATCCTTCATCTGATGAC---TGGATACAGAATCCATCCATTGG MSV-RE[N2AR6] GAGGCTCTGCTTTCTTGATCCTTCATCTGATGAC---TGGATACAGAATCCATCCATTGG MSV-RE[N2AR2] GAGGCTCTGCTTTCTTGATCCTTCATCTGATGAC---TGGATACAGAATCCATCCATTGG MSV-RE[N2AR5] GAGGCTCTGCTTTCTTGATCCTTCATCTGATGAC---TGGATACAGAATCCATCCATTGT MSV-RE[N2AR8] GAGGCTCTGCTTTCTTGATCCTTCATCTGATGAC---TGGATACAGAATCCATCCATTGT MSV-RE[SP1R10] GAGGCTCTGCTTTCTTGATCCTTCATCTGATGAC---TGGATACAGAATCCATCCATTGG MSV-RE[SP2R13] GAGGCTCTGCTTTCTTGATCCTTCATCTGATGAC---TGGATACAGAATCCATCCATTGG MSV-RE[SP2R11] GAGGCTCTGCTTTCTTGATCCTTCATCTGATGTC---TGGATACAGAATCCATCCATTGG MSV-RE[SP2R7] GAGGCTCTGCTTTCTTGATCCTTCATCTGATGTC---TGGATACAGAATCCATCCATTGG MSV-RE[SP2R12] GAGGCTCTGCTTTCTTGATCCTTCATCTGATGTC---TGGATACAGAATCCATCCATTGG MSV-KE[SA] GAGGCTCTGCTTTCTTGATCTTTCATCTGATGAC---TGGATACAGAATCCATCCATTGG MSV-KE[Kom] GAGGCTCTGCTTTCTTGATCTTTCATCTGATGAC---TGGATACAGAATCCATCCATTGG MSV-KE GAGGCTCTGCTTTCTTGATCTTTCATCTGATGAC---TGGATACAGAATCCATCCATTGG MSV-KE[NG] GAGGCTCTGCTTTCTTGATCTTTCATCTGATGAC---TGGATACAGAATCCATCCATTGG SetSV GAGGCTGCGCTTCCTTGTTCCATAATCTGCTTGC---TGGTTAAATCATCCAGCCATTCG SSEV-[BS] CAGAGACTGTTTCCTGTGCCCTGGGA-TGTT--C---TGGATGCGGATTGCATCCATTCT SSEV-[Giz] CAGAGACTGTTTCCTGTGCCCTGGGA-TGTT--C---TGGATGCGGATTGCATCCATTCT SSEV-[Man] GAGAGACTGTTTCCTGTGCCCTGGGA-TGTT--C---TGGATGCGGATTGCATCCATTCT SSEV-[Asw] GAGAGATTGTTTCCTGTGCCCTGGGA-TGTT--C---TGGATGCGGATTGCATCCATTCT SSV-ZA CAGGCTGAGCTTCCTGTTGGAATTAG-AGTT--C---TGGATGTTTCATGCATCCATATC SSREV GAGGCTAAGCTTTCTTGTACCTGTAT-TGTT--C---TGGATGTAGAAGACATCCATTCT PanSV-KE GAGGCTTCTCTTTCTTTCTCCTGGAG-CATT--C---TGGTTGTATCATCCAACCATTCT PanSV-Kar GAGGCTTCGCTTTCTTGCTCCTGGAA-TAAT--C---TGGTTGTTTCAGACAACCATTCT DSV GAGGCTGCGTTTTCTGACCCCATCCG-TGAC--C---TAGTGTAATCAGACATCCATTGT CSMV CAGGCTTCGTCTCCGGACTCCAGGGCTCCAGACC---TGGTTAGGTCAGACATCCATTGG WDV-[SE] GATGGACTTATGCCT--CCCCGGT-------GACTCCTGGAATAATCGTCCATCCACTCT WDV-[FR] GATGGACTTATGCCT--CCCCGGT-------GACTCCTGGAATAATCGTCCATCCACTCT WDV-[CZ] GATGGACTTATGCCT--CCCCGGT-------GACTCCTGGAATAATCGTCCATCCACTCT TYDV GAGGGAGGGGATCCTGGTTCCAGCCCTTCTAGGTTCCTGGATATGTCGTCCATCCAAACT BeYDV GAGGCTGGGGTGTCTGACCCCAGTCCTTCCCTCATCCTGGTTAGATCGGCCATCCACTCA MiSV-[JP] --------TATGCTT---CGTGGTC-TCCGCGGCCCGTTAGGCTGTATTCAAACCACT-- MiSV --------TATGCTT---CGTGGTC-TCCGCGGCCCGTTAGGCTGTATTCAAACCACT-- [ 1981 2040] RANDOM AGGGCACAGCTC-TAGGTTAGAGCGTTTTATACCCCCCTCCACCTGGCCCTCGACGCTCA MSV-RE[N2AR3] AGGTCAGAGATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-RE[N2AR4] AGGTCAGAGATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-RE[N2AR6] AGGTCAGAGATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-RE[N2AR2] AGGTCAGAGATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-RE[N2AR5] AGGTCAGAGATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-RE[N2AR8] AGGTCAGAGATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-RE[SP1R10] AGGTCAGAGATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-RE[SP2R13] AGGTCAGAGATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-RE[SP2R11] AGGTCAGAGATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-RE[SP2R7] AGGTCAGAGATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-RE[SP2R12] AGGTCAGAGATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-KE[SA] AGGTCAGAGATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-KE[Kom] AGGTCAGAAATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG MSV-KE AGGTCAGAAATTGCATCATCGAGGGTATAACAGGCAGGTTGAAGGAGCATGTAAGCTTCG MSV-KE[NG] AGGTCAGAAATTGCATCCTCGAGGGTATAACAGGTAGGTTGAAGGAGCATGTAAGCTTCG SetSV AGATCAGAAATAGCGTCGTCGATGGAATAACAGTTGGGTTGAAGAAGCAGGTACGCTTGT SSEV-[BS] AAGTCAGAGATTGCTTCCTCAAGGGTTAAGCAGGTAGGAGTAAGCAGCATGTAGGCTTCT SSEV-[Giz] AAGTCAGAGATTGCTTCCTCAAGGGTTAAGCAGGTAGGAGTAAGCAGCATGTAGGCTTCT SSEV-[Man] AAGTCAGAGATTGCTTCCTCAAGGGTTAAGCAGGTAGGAGTAAGCAGCATGTAGGCCTCT SSEV-[Asw] AAGTCAGAAATTGCGTCCTCAAGGGTTAAGCAGGTAGGAGTAAGCAGCATGTAGGCTTCT SSV-ZA AGATCAGAAGTTGCTTCTTCCAGGGTTAAGCAACTGGGATTAGCTAGCATGTATGCAGAA SSREV AGGTCAGAGGATGCCTCTTCCAGGCTTAAGCAATGTGGGTTACAGAGCATGTATGCTTCA PanSV-KE AAGTCAGCAATTGCCTGTTCTAGGCTTAAGCAGCTAGGTTCTAGGAGTTTGTAAGCTTGA PanSV-Kar AAGTCAGCTTTGGCTTGCTCTAGGCTTAAGCAGCTAGGTTCAAGGAGCATGTATGCTTTA DSV AAGTCAGAGATAGCTTCCTCGCGGGTATAACAGGTAGGGTTCAACAAGCAATAAGCTTCA CSMV AGGTCAATACGTGCTTGTTCC----TCCG--AAATACCTGCATGCAGACTGAGGGCTTGA WDV-[SE] AAGTCAGATTGCGCTTGATC-----CGCAGGAGTGGAAGTACA-AAGGATATAGGATTCG WDV-[FR] AAGTCAGATTGCGCTTGATC-----CGCAGGAGTTGAAGTACA-AAGGATATAGGATTCG WDV-[CZ] AAGTCAGATTGCGCTTGATC-----CGCAGGAGTGGAAGTACA-AAGAGTATAGGATTCG TYDV AAGTCAGAGTGTGCTTCAAC------AAGTGTGACGTTATGAACTAGACGGTAAGCATCT BeYDV AGGTCAGATTGTGCTTGATC------GTAGGAGACAGGATGTATGAAAGTGTAGGCATCG MiSV-[JP] --GTTGGTTTGTAAGT-ATT-----CAAGAAATTTGAAA-GAGTGAAGCT-TAA---TCG MiSV --GTTGGTTTGTAAGT-ATT-----CAAGAAATTTGAAA-GAGTGAAGCT-TAA---TCG [ 2041 2100] RANDOM AGACTG---CGATTAGGCCCGCGCTTCCATTACTGGTTG-CAGCCTCAGGGCACAGC--T MSV-RE[N2AR3] GGACTGACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAGAGTAAA MSV-RE[N2AR4] GGACTGACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAGAGTAAA MSV-RE[N2AR6] GGACTGACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAGAGTAAA MSV-RE[N2AR2] GGACTGACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAGAGTAAA MSV-RE[N2AR5] GGACTGACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAGAGTAAA MSV-RE[N2AR8] GGACTGACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAGAGTAAA MSV-RE[SP1R10] GGACTGACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAGAGTAAA MSV-RE[SP2R13] GGACTGACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAGAGTAAA MSV-RE[SP2R11] GGACTGACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAGAGTAAA MSV-RE[SP2R7] GGACTGACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAGAGTAAA MSV-RE[SP2R12] GGACTGACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAGAGTAAA MSV-KE[SA] GGACTAACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAAAGTAAA MSV-KE[Kom] GGACTAACCTGGAAGATGTTAGGCTGGAGCCAATCGTTGATTGACTCATTACAAAGTAAA MSV-KE GGACTAACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAAAGTAAA MSV-KE[NG] GGACTAACCTGGAAGATGTTAGGCTGGAGCCAATCATTGATTGACTCATTACAAAGTAAA SetSV GGACTGACCTGGTATATGTTAGGTTGCAACCAATCTTTGATTGATTCGTTGCATAGCAGG SSEV-[BS] GGACTAACCTGATAGATGTTGGGGTTGAGCCAATCTTCTATGGTTTCGAAGTTTACGAGG SSEV-[Giz] GGACTAACCTGATAGATGTTGGGGTTGAGCCAATCTTCTATGGTTTCGAAGTTTACGAGG SSEV-[Man] GGACTAACCTGATAGATGTTGGGG---AGCCAATCTTCTATGGTTTCGAAGTTAATGAGG SSEV-[Asw] GGACTAACCTGATAGATGTTGGGGTTGAGCCAATCTTCTATGGTTTCGAAGTTTATGAGG SSV-ZA GGACTAACCTGGTAGAGGTTGTTCTCAAGCCAGGTATTTATTGCCGTAGGATCGAGGAGT SSREV GGACTAACCTGAAACAGGTTGGGTTGCACCCAGTTGTCAATGGTGGTTGGGTCCCTCAGA PanSV-KE GGACTGACCTGATATATGTTTGGCTTTAGCCAGTCCTCAATTGTCTCATTGCAGTGGAGG PanSV-Kar GGACTGACCTGGTAGATGTTAGGCTCAAGCCAGTCCTGGAGTGTTTCGTTGCAGAGGAGG DSV GCACTGACCTGAAAGAGGTCATTCTGAAGCCAATCTGTGATGGTCTCTTGGCACAAGAGG CSMV GGACTTACAGTATACAGCTCCTGCTGGAGCCATTCTCCTATGACCGGATGGTCGGACATG WDV-[SE] AGGCTTACGGAGTAGAGATGTTCATTTTTCCAGCTTTCAATGGTCTCATGG-CAAATGAG WDV-[FR] AGGCTTACGGAGTAGAGATGTTCATTTTTCCAGCTTTCAATGGTTTCATGG-CAAATGAG WDV-[CZ] AGGCTTACGGAGTAGAGATGTTCATTTTTCCAGGTTTCAATGGTCTCATGG-CAAATGAG TYDV ACACTTACGTGGTATAGATGCTGGTCTCTCCATAACTGCAGATCTTCATGA-CATTGGAG BeYDV ATGCTTACATGATATAGGTGCGTCTCTCTCCAGTTGTGCAGATCTTCGTGG-CAGCGGAG MiSV-[JP] GTAGTTACCTGGTTCCATTCCTGGTCTATG-ATGTCAACGAGCTCCGGCGGACAGACGAT MiSV GTAGTTACCTGGTTCCATTCCTGGTCTATG-ATGTCAACGAGCTCCGGCGGACAGACGAT [ 2101 2160] RANDOM CTAGGTTC-TCGGTCAGATTTCTAGCCAAGTGCGTTTCGTGTTTTTCATGTGCTTGGCTT MSV-RE[N2AR3] TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATTTCAGGAAAAAGTTTA MSV-RE[N2AR4] TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATTTCAGGAAAAAGTTTA MSV-RE[N2AR6] TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATTTCAGGAAAAAGTTTA MSV-RE[N2AR2] TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATTTCAGGAAAAAGTTTA MSV-RE[N2AR5] TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATTTCAGGAAAAAGTTTA MSV-RE[N2AR8] TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATTTCAGGAAAAAGTTTA MSV-RE[SP1R10] TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATTTCAGGAAAAAGTTTA MSV-RE[SP2R13] TCAGGTGCGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATTTCAGGAAAAAGTTTA MSV-RE[SP2R11] TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATTTCAGGAAAAAGTTTA MSV-RE[SP2R7] TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATTTCAGGAAAAAGTTTA MSV-RE[SP2R12] TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATTTCAGGAAAAAGTTTA MSV-KE[SA] TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATCTCAGGAAAAAGCTTA MSV-KE[Kom] TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATCTCAGGAAAAAGCTTA MSV-KE TCAGGTGAGGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATCTCAGGGAAAAGCTTA MSV-KE[NG] TCAGGTGATGAGGGTGGATGAGGATTGGTGAACTCTTCCTGAATCTCAGGAAAAAGCTTA SetSV TCTGGTTCAGAGGTAGGATGGGGATTGATGAACTCTTCCTGAATATCAGGAAATAGTTTG SSEV-[BS] TCCGGTTCAGTGGGAGGATGAGGATTGGTGTATACTTCTGCAGTTTCAGGGAACAATCTG SSEV-[Giz] TCCGGTTCAGTGGGAGGATGAGGATTGGTGTATACTTCTGCAGTCTCAGGAAACAATCTG SSEV-[Man] TCCGGTTCAGTGGCAGGATGAGGATTGGTGTATACTTCTGCAGTCTCAGGGAACAATCTG SSEV-[Asw] TCCGGTTCAGTGGGAGGATGAGGATTGGTGTATACTTCTGCAGTTTCAGGGAACAATCTG SSV-ZA GCTGGTGTGCTTTGAGGGAAAGGACTGGTGTATATTTCCTGGATGTCAGGAAACAGTTTA SSREV AGTGGCGTGGTAGTAGGATGAGGACTGGTGTACTCTTCCACAGTATCTGGGAATAGCTTA PanSV-KE TCATATTCAGTGGTAGGATGAGGATTGGTGTAAGGCTCTGCAATGTCCGGGAAGAGGCGA PanSV-Kar TCAGGGTCAGTGGCAGGATGAGGATTGCTGTAAGGCTCTGCAATGTCCGGGAACAGGCGA DSV TCAGGCTCAGACGGAGGATGAGGATTGATGAATGGTGCAGCCTCAACTGGGAACAATCTA CSMV TCCCTTGACGCGTATGG-CGCGGAGTAG-----GTTTGAGGAGGGTCAGGGAACAGGGCA WDV-[SE] T--GATTCGGTTGG-AAACTCAGGTGTGTAAGTGGCAACTGG--GTCAGGAAATAGATGG WDV-[FR] A--GATTCGGTTGG-AAACTCAGGTGTGTAAGTGGCAACTGG--GTCAGGAAATAGATGG WDV-[CZ] T--GATTCGGTTGG-AAACTCAGGTGTGTAAGTGGCAACTGG--GTCAGGAAATAGATGG TYDV A--TCTTCCTCAGT-GAATGTGGCCTGGTAGATTTCAGGTTG--TGGTGGAAATAGTTTA BeYDV A--TCTGATTCTGT-GAAGGGCGACACGTACTGCTCAGGTTG--TGGAGGAAATAATTTG MiSV-[JP] C--TGCTCATTTGG-GAACGGTGACTGATATACCGGAGGTGG--TTCGGTAAACAAGGCT MiSV C--TGCTCATTTGG-GAACGGTGACTGATATACCGGAGGTGG--TTCGGTAAACAAGGCT [ 2161 2220] RANDOM ATGAAGTCGCACTAAGAACAC----GCTCGG-GGCCTCCCCACGCGAAGCGTCTAGGTCA MSV-RE[N2AR3] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCATAGGGAAACTCTTTCTGG MSV-RE[N2AR4] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCATAGGGAAACTCTTTCTGG MSV-RE[N2AR6] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCATAGGGAAACTCTTTCTGG MSV-RE[N2AR2] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCATAGGGAAACTCTTTCTGG MSV-RE[N2AR5] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCATAGGGAAACTCTTTCTGG MSV-RE[N2AR8] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCATAGGGAAACTCTTTCTGG MSV-RE[SP1R10] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCATAGGGAAACTCTTTCTGG MSV-RE[SP2R13] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCATAGGGAAACTCTTTCTGG MSV-RE[SP2R11] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCATAGGGAAACTCTTTCTGG MSV-RE[SP2R7] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCATAGGGAAACTCTTTCTGG MSV-RE[SP2R12] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCATAGGGAAACTCTTTCTGG MSV-KE[SA] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCAAAGGGAAGCTCTTTCTGG MSV-KE[Kom] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCAAAGGGGAGCTCTTTCTGG MSV-KE TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCAAAGGGAAGCTCTTTCTGG MSV-KE[NG] TTTGCAGAGTATTCAAAATACTGCAATTTTGTGGACCAATCAAAGGGAAGCTCTTTCTGG SetSV TTGGCCGAGTACTCGAAGTACTGAAGTTTAGTGGACCAATCATAAGGGAGGGATTTCTGA SSEV-[BS] GAGGCTGAGTACTCAAAGTACTGGAGCTTCGTTGCCCACTCGTAGGGGAGTGCCTTCTGA SSEV-[Giz] GAGGCTGAGTACTCAAAGTACTGGAGCTTCGTTGCCCACTCGTAGGGGAGTGCCTTCTGA SSEV-[Man] GAGGCTGAGTACTCAAAGTACTGGAGCTTCGTTGCCCACTCGTAGGGGAGTGCCTTCTGA SSEV-[Asw] GAGGCTGAGTACTCAAAGTACTGGAGCTTCGTTGCCCACTCGTAGGGGAGTGCCTTCTGA SSV-ZA TTTGCCGAATACTCAAAGTATTGTAGTTTGGTGGCCCACTCGTAAGGTAGAGCTTTCTGT SSREV GAAGCTGAGTATTCAAAGTATTGCAGTTTCGTAGCCCAGTCGTATGGTAATGCCTTCTGA PanSV-KE CTAGCTGAGTATTCAAAGTAGTTCAGTTTTGTAGCCCAGTCATACGGGAGGCTGCTCTGC PanSV-Kar CTAGCTGAGTACTCAAAGTATGACAGTTTTGTGGCCCAGTCGTAAGGCAGTGAAGTCTGC DSV TCAGCTGAGTACTCGAAGTACGACAGCTTTGTAGCCCAGTCATAAGGCAGAGCCTTCTGC CSMV TTTGCACTGTATTGGAATTGCTGTAGGCGTACCGCCCATTCGAAAGGGAAACTCTTTCGA WDV-[SE] CGTGCCGTGTACTCGAAGTCTTTGAGACGGATAGACCATTCAAACGGAAAACGATTGCAA WDV-[FR] CGTGCCGTGTACTCGAAGTCTTTGAGACGGATAGACCATTCAAACGGAAAACGATTGCAA WDV-[CZ] CGTGCCGTGTACTCGAAGTCTTTGAGACGGATAGACCATTCAAACGGAAAACGATTGCAA TYDV TTTGCAGAGTATTCCAACCACTGTAATTTTGTTGCCCATTCATGAGGAAATTCATCCTTT BeYDV TTGGCTGAATATTCCAGCCATTGAAGCTTTGTTGCCCATTCATGAGGGAATTCTTCTTTG MiSV-[JP] GCTGCACTGTATTCAAACTGCTGGAGTCTGATGGCCCAGTCAAATGGGAATTCTTTACGG MiSV GCTGCACTGTATTCAAACTGCTGGAGTCTGATGGCCCAGTCAAATGGGAATTCTTTACGG [ 2221 2280] RANDOM AA-AGACAGTCGAACGAACCCTAGAAGTTAGCGAATGTTTAGAAATGAATT-TGACAACA MSV-RE[N2AR3] ATCATAGAGAGGTACTCTTCCTTGGAGGTGGAGTGTGAAATAATGTCTCGCATTATTTCA MSV-RE[N2AR4] ATCATAGAGAGGTACTCTTCCTTGGAGGTGGAGTGTGAAATAATGTCTCGCATTATTTCA MSV-RE[N2AR6] ATCATAGAGAGGTACTCTTCCTTGGAGGTGGAGTGTGAAATAATGTCTCGCATTATTTCA MSV-RE[N2AR2] ATCATAGAGAGGTACTCTTCCTTGGAGGTGGAGTGTGAAATAATGTCTCGCATTATTTCA MSV-RE[N2AR5] ATCATAGAGAGGTACTCTTCCTTGGAGGTGGAGTGTGAAATAATGTCTCGCATTATTTCA MSV-RE[N2AR8] ATCATAGAGAGGTACTCTTCCTTGGAGGTGGAGTGTGAAATAATGTCTCGCATTATTTCA MSV-RE[SP1R10] ATCATAGAGAGGTACTCTTCCTTGGAGGTGGAGTGTGAAATAATGTCTCGCATTATTTCA MSV-RE[SP2R13] ATCATAGAGAGGTACTCTTCCTTGGAGGTGGAGTGTGAAATAATGTCTCGCATTATTTCA MSV-RE[SP2R11] ATCATAGAGAGGTACTCTTCCTTGGAGGTGGAGTGTGAAATAATGTCTCGCATTATTTCA MSV-RE[SP2R7] ATCATAGAGAGGTACTCTTCCTTGGAGGTGGAGTGTGAAATAATGTCTCGCATTATTTCA MSV-RE[SP2R12] ATCATAGAGAGGTACTCTTCCTTGGAGGTGGAGTGTGAAATAATGTCTCGCATTATTTCA MSV-KE[SA] ATCATGGAGAGGTACTCTGCTTTGGAAGTAGCGTGTGAAATAATGTCTCGCATTATTTCA MSV-KE[Kom] ATCATGGAGAGGTACTCTTCTTTGGAGGTAGCGTGTGAAATAATGTCTCGCATTATTTCA MSV-KE ATCATGGAGAGGTACTCTTCCTTGGAAGTAGAGTGTGAAATAATGTCTCGCATTATTTCA MSV-KE[NG] ATCATGGAGAGGTACTCTTCTTTGGAAGTAGCGTGTGAAATAATGTCTCGCATTATTTCA SetSV ACCATGGAGAGGTACTCCTGCTTGGAAGTAGCATGAGAAATAATGTCTCGCATTATTTCA SSEV-[BS] AGCATTGAAAGGTACTCTTGCTTGGAGGTGGAGTGTTCGATGATATCTCTCACGATATCA SSEV-[Giz] AGCATTGAAAGGTACTCTTGCTTGGAGGTGGAGTGTTCGATGATATCTCTCACGATATCA SSEV-[Man] ATCATTGAAAGGTACTCTTGCTTGGAGGTGGAGTGTTCGATGATATCTCTCACGATATCA SSEV-[Asw] AGCATGGAAAGGTACTCTTGCTTCGAGGTGGAGTGTTCGATGATATCTCTCACGATATCA SSV-ZA ATCATGGAGAGGTACTCTTGCTTGTTGGTGGAATGTTCTATGATATCTCTTACGATATCA SSREV AGCATGGAAAGGTACTCTTCCTTAGAGGTGGAGTGCTCGATGATATCTCTAACGATATCA PanSV-KE ACTAGAGAAAGGTACTCTTCCCTACTAGTAGCATGTGTCATGATCTCTCTCATGACTTCA PanSV-Kar ACTAGTGAAAGGTACTCTGCTCTGCTAGTGGCATGTGTCATGATCTCCTTCATGACCTCA DSV ACCATGGAGAGGTACTCTTCCTTTGATGTAGCATGATCAATGATGTCACGCATGACATCG CSMV ACCATGCTCAGATATTCGTCCCTGGACGTGGCGTTTGCCATGATTTGTTTCATGGTCTTG WDV-[SE] ACCATGCTGAGGAATTCCTCGCGAGAGGAACTAGATTCAATGATCTGTTTCATATCCGCA WDV-[FR] ACCATGCTGAGGAATTCCTCGCGAGAGGAACTAGATTCAATGATCTGTTTCATATCCGCG WDV-[CZ] ACCATGCTGAGGAATTCCTCGCGAGAGGAACTAGATTCAATGATCTGTTTCATATCCGCA TYDV ATCATGTCCAGATATTCCTCTTTAGAAGTCGCAGTCTGGATAA--TAGTTCGC-----CA BeYDV ATCATGTCAAGATACTCCTCCTTAGACGTTGCAGTCTGGATAA--TAGTTCGC-----CA MiSV-[JP] ACCATGGACAGGTATTCATTCCTATTGGTGGAGGAGGCTATTATCATAGCCATCCTTTGA MiSV ACCATGGACAGGTATTCATTCCTATTGGTGGAGGAGGCTATTATCATAGCCATCCTTTGA [ 2281 2340] RANDOM CTCATGGGGATCTTCTAGCCAAGTGCGTTTCGTGTTTTTCATGTGCTTGGCTTATGAAGT MSV-RE[N2AR3] TCTTTTGAAGGCTTTTTTTCC---TTTACTTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-RE[N2AR4] TCTTTTGAAGGCTTTTTTTCC---TTTACTTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-RE[N2AR6] TCTTTTGAAGGCTTTTTTTCC---TTTACTTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-RE[N2AR2] TCTTTTGAAGGCTTTTTTTCC---TTTACTTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-RE[N2AR5] TCTTTTGAAGGCTTTTTTTCC---TTTACTTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-RE[N2AR8] TCTTTTGAAGGCTTTTTTTCC---TTTACTTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-RE[SP1R10] TCTTTTGAAGGCTTTTTTTCC---TTTACTTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-RE[SP2R13] TCTTTTGAAGGCTTTTTTTCC---TTTACTTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-RE[SP2R11] TCTTTTGAAGGCTTTTTTTCC---TTTACTTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-RE[SP2R7] TCTTTTGAAGGCTTTTTTTCC---TTTACTTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-RE[SP2R12] TCTTTTGAAGGTTTTTTTTCC---TTTACTTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-KE[SA] TCTTTAGAAGGCTTTTTTTCC---TTTACCTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-KE[Kom] TCTTTAGAAGGCTTTTTTTCC---TTTACCTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-KE TCTTTGGAAGGCTTTTTTTCC---TTTACTTCTGAATCAGAT-TTTCCTAGGAAGGGGGA MSV-KE[NG] TCTTTAGAAGGCTTTTTTTCC---TTTACCTCTGAATCAGAT-TTTCCTAGGAAGGGGGA SetSV TCTTTGGATGGTTTCTTATCCGAATTTCCCTTTGAG---GAG-TTTCCTAGGAATGATTT SSEV-[BS] TCTTTTGTGGGTTTAGGTTGCCTATCCTCAGATGAAGTGG-------TAGCAAATGATTT SSEV-[Giz] TCTTTTGTGGGTTTAGGTTGCCTATCCTCAGATGAAGTGG-------TAGCAAAGGATTT SSEV-[Man] TCTTTTGTGGGTTTAGGTTGCCTATCCTCAGATGAAGTGG-------TAGCAAATGATTT SSEV-[Asw] TCTTTTGTGGGTTTAGGTTGCCTATCCTCAGATGAAGTGG-------TAGCAAAGGATTT SSV-ZA TCCTTGGATTGCTTCTTGGAATTTGGCTCAGTCGAATCTC-------CTAGGAAGGAGGT SSREV TCCTTGGAGGGTTTGGAATTCTTGCTCTCAGAGGAAGAGG-------ATACAAAGCATTG PanSV-KE TCCTTGGTAGGTTTCTTCTCAGCTGGCTCCTTACCTGGAG-------GGACGAAGCTCTT PanSV-Kar TCCTTAGAAGGCTTCTTCTCAGAGTTTTCCTTACCTGGAG-------GAACGAAGCTCTT DSV TCCTTATTGTGTTTCTTCTCGGAAGAT---GAACTCTCCC-------CAAGAAATGGTGA CSMV TCCCTAGAGGCCGACTGGGTCGGACTC-CTGTTGACCTTGGG-TTTC--AGGAA------ WDV-[SE] TC----ACGGTCTTTACGACCTGGAGTTGAAACAGCCACGAA-TGTTCCCCACTCAGCTG WDV-[FR] TC----ACGGTCTTTACGACCTGGAGTTGAAACAGCCACGAA-TGTTCCCCACTCAGCTG WDV-[CZ] TC----ACGGTCTTTACGACCTGGAGTTGAAACAGCCACGAA-TGTTCCCCACTCAGCTG TYDV TC----GC--TCATCA-GATTTGGAA--GGGGAGACTCTGTG-TTTCTTGAACTCTCCTT BeYDV TC----GT--GCGTCA-GATTTGCGA--GGAGAGACCTTATG-ATCTCGGAAATCTCCTC MiSV-[JP] TC----ACGGGTAG-GCTTCTCAGGTTTC--TTGTTCCTGAG----TTGGAGTTCACCCA MiSV TC----ACGGGTAG-GCTTCTCGGGTTTC--TTGATCCTGAG----TTGGAGTTCACCCA [ 2341 2400] RANDOM CGCACTAAGAACACGCTCGGGGCCTCCCCACGCGA--AGCGTCTAGGTCAAAAGACAGTC MSV-RE[N2AR3] CTTCCTAGGAATGAAAGTACCTCTCTCAAACATAGCCAGCGGTTCCTTGAGAATGTAATC MSV-RE[N2AR4] CTTCCTAGGAATGAAAGTACCTCTCTCAAACATAGCCAGCGGTTCCTTGAGAATGTAATC MSV-RE[N2AR6] CTTCCTAGGAATGAAAGTACCTCTCTCAAACATAGCCAGCGGTTCCTTGAGAATGTAATC MSV-RE[N2AR2] CTTCCTAGGAATGAAAGTACCTCTCTCAAACATAGCCAGCGGTTCCTTGAGAATGTAATC MSV-RE[N2AR5] CTTCCTAGGAATGAAAGTACCTCTCTCAAACATAGCCAGCGGTTCCTTGAGAATGTAATC MSV-RE[N2AR8] CTTCCTAGGAATGAAAGTACCTCTCTCAAACATAGCCAGCGGTTCCTTGAGAATGTAATC MSV-RE[SP1R10] CTTCCTAGGAATGAAAGTACCTCTCTCAAACATAGCCAGCGGTTCCTTGAGAATGTAATC MSV-RE[SP2R13] CTTCCTAGGAATGAAAGTACCTCTCTCAAACATAGCCAGCGGTTCCTTGAGAATGTAATC MSV-RE[SP2R11] CTTCCTAGGAATGAAAGTACCTCTCTCAAACATAGCCAGCGGTTCCTTGAGAATGTAATC MSV-RE[SP2R7] CTTCCTAGGAATGAAAGTACCTCTCTCAAACATAGCCAGCGGTTCCTTGAGAATGTAATC MSV-RE[SP2R12] CTTCCTAGGAATGAAAGTACCTCTCTCAAACATAGCCAGCGGTTCCTTGAGAATGTAATC MSV-KE[SA] CTTCCTAGGAATGAAAGTACCTCTCTCAAACACAGCCAGAGGTTCCTTGAGAATGTAATC MSV-KE[Kom] CTTCCTAGGAATGAAAGTACCTCTCTCAAACACAGCCAGAGGTTCCTTGAGAATGTAATC MSV-KE CTTCCTAGGAATGAAAGTACCTCTCTCAAACACAGCCAGAGGTTCCTTGAGAATGTAATC MSV-KE[NG] CTTCCTAGGAATGAAAGTACCTCTCTCAAACACAGCCAGAGGTTCCTTGAGAATGTAATC SetSV CTTCCTAGGAATGAATGTACCTCTCTCAAACAAGGCCAGGGGTTCCTTGGTGATGTAATC SSEV-[BS] CTTGCGTGGGATGAAAGTACCTTTCTCCCACTGTTTGATCGGGTTTTTGAGCACGTATTC SSEV-[Giz] CTTGCGTGGGATGAAAGTACCTTTCTCCCACTGTTTGATCGGGTTTTTGAGCACGTATTC SSEV-[Man] CTTGCGTGGGATGAAAGTACCTTTCTCCCAGTGTTTGATCGGGTTTTTGAGCACGTATTC SSEV-[Asw] TTTGCGTGGGATGAAAGTACCTTTCTCCCATTGTTTGATCGGGTTTTTGAGCACGTATTC SSV-ZA CTTCCTAGGTATGAACGTACCTCTCTCCCAGTATGTAACCGGGTTCTTCATGGCGTATGC SSREV TTTGCGTGGAATAAATGTACCTTTCTCCCATTTAGCGATTGGATTTTTCAGTATGTATTC PanSV-KE CTTCCTTGGGATGTATGTACCTTTCTCCCACTTGTCCTTGGGGTCCTTCAGTATGTACTC PanSV-Kar CTTCCTTGGTATGTAAGTACCTTTCTCCCACTTGTCCTTGGGATCCTTCAGTATGTACTC DSV TTTTCTTGGGACAAAAGTACCTCTCTCAAATTTCTCCACTGGGTTTTTCAGTATGTATGT CSMV TTTTCCAAATTCCCAGCTAC---TCTCAGGATGTTTCATACAGTATTTCAGAGTA----- WDV-[SE] TGTTTACATCGGAGTCAACCTCCTTCGTGATGTAATCACGAACTTGGT-----TGCAGTC WDV-[FR] TGTTTACATCGGAGTCAACCTCCTTCGTGATGTAATCACGAACTTGGT-----TGCAGTC WDV-[CZ] TGTTTGCATCGGAGTCAACCTCCTTCGTGATGTAATCACGAACTTGGT-----TGCAATC TYDV TGGTGATGACG---TTTCCGTCTTTGGAGATGTATTCAAGAACTTGTT-----CAGAGTT BeYDV TGGTTTTAATA---TCTCCGTCCTTTGATATGTAATCAAGGACTTGTT-----TAGAGTT MiSV-[JP] TTTCATCAGAGTCACCGTTGGTTTTGGATATGTATCCGAAAACCTTTT-----CAGCATC MiSV TTTCATCAGAGTCACCGTTGGTTTTGGATATGTATCCGAAAACCTTTT-----CAGCATC [ 2401 2460] RANDOM GAACGAACCCTAGAAGTTAGCG-AATGTTTAGAAA---TGAATTTGACAACACTCATG-- MSV-RE[N2AR3] TCTCACCCTGTTTA--CTGATTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-RE[N2AR4] TCTCACCCTGTTGA--CTGATTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-RE[N2AR6] TCTCACCCTGTTGA--CTGATTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-RE[N2AR2] TCTCACCCTGTTGA--CTGATTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-RE[N2AR5] TCTCACCCTGTTGA--CTGATTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-RE[N2AR8] TCTCACCCTGTTGA--CTGATTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-RE[SP1R10] TCTCACCCTGTTGA--CTGATTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-RE[SP2R13] TCTCACCCTGTTTA--CTGATTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-RE[SP2R11] TCTCACCCTGTTGA--CTGATTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-RE[SP2R7] TCTCACCCTGTTGA--CTGATTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-RE[SP2R12] TCTCACCCTGTTGA--CTGATTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-KE[SA] CCTCACTCTGTTAA--CTGACTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-KE[Kom] CCTCACTCTGTTAA--CTGACTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-KE CCTCACCCTGTTAA--CTGACTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC MSV-KE[NG] CCTCACCCTGTTTA--CTGACTTGGCACTCTGAATATTTGGGTGAAACC-CATTTATATC SetSV TCGTACCTTGTTGGGGCTGATT--GCACTCTGAATGTTGGGGTGGAAAC-CATCAATGTC SSEV-[BS] CTTGACCCTGTC--TGCGGACTTGGCACTCTGAATGTTAGGATGGAAAT-CCTCAATGTC SSEV-[Giz] CTTGACCCTGTC--TGCGGACTTGGCACTCTGAATGTTAGGATGGAAAT-CCTCAATGTC SSEV-[Man] CTTGACCCTGTC--TGCGGACTTGGCACTCTGAATGTTAGGATGGAAAT-CCTCAATGTC SSEV-[Asw] CTTGACCCTGTC--TGCGGACTTGGCACTCTGAATGTTAGGATGGAAAT-CCTCAATGTC SSV-ZA TCTGACCTTGTT--GGCACTCTTTGCACTCTGAATGTTGGGATGGAAGC-CATCAATGTC SSREV CCTGACTTTGTT--GGCACTCTTTGCACTCTGAATGTTAGGGTGGAAAC-TCTCAATGTC PanSV-KE ACGCACCTTGTC--AGTGCTCTTGGCGCTCTGTATGTTCCCATGGTACC-GATCTATGTC PanSV-Kar ACGTACCTTGTC--AGTGCTCTTGGCGCTCTGTATATTCGGATGATACC-GATCTATGTC DSV CCTGACCTTGTT--GACGCTCTTTGCACTCTGAATATTTGGGTGGAACT-CAAGAATGTC CSMV ------CTGGCTG--GCTGCCTT-GCAGCTTGGATATTTGGATGAAATT-CATCCAGGTC WDV-[SE] TTTGGCAGCTTGTATATTTGGATGGAATATGGAGAATGGAGATGTATCCATACGGAGGTT WDV-[FR] TTTGGCAGCTTGTATATTTGGATGGAATATGGAGAATGGAGATGTATCCATACGGAGGTT WDV-[CZ] TTTGGCAGCTTGTATATTTGGATGGAATATGGAGAATGGAGATGTATCCATACGGAGGTT TYDV TTTAGCTGGTTGGATATTTGGATGG-------------------TTTCC-TTCA-AGATC BeYDV TCTAGCTGGCTGGATATTAGGGTGA-------------------TTTCC-TTCA-AAATC MiSV-[JP] TCTGACGGGCTGAATGTTTGGGTGGAA------------------ACCC---TGAACATC MiSV TCTGACGGGCTGAATGTTTGGGTGGAA------------------ACCC---TGAACATC [ 2461 2520] RANDOM --GGGATCC--AATCCGTCA-----GAAGTTTATCCGAACCG---CCGGACACGCA-ATG MSV-RE[N2AR3] AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-RE[N2AR4] AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-RE[N2AR6] AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-RE[N2AR2] AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-RE[N2AR5] AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-RE[N2AR8] AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-RE[SP1R10] AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-RE[SP2R13] AAAGAACCTTGAGTCAGTTATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-RE[SP2R11] AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-RE[SP2R7] AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-RE[SP2R12] AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-KE[SA] AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-KE[Kom] AAAGAACCTTGAGTCAGATATCCTTATCGGCTTCTCTGGCTGAAGCAATGCATGTAAATG MSV-KE AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG MSV-KE[NG] AAAGAACCTTGAGTCAGATATCCTTACCGGCTTCTCTGTCTGAAGCAATGCATGTAAATG SetSV GAAGAACCTTGAGTCGGTAGTCCTAACTGGTTTCTCCGTCTGTATTAATGCATGTAAACA SSEV-[BS] AAAGAACCTAGGGTTCGTAGTTTGCACAGGCTTGACGCTCTGAGCTAAGGCATGGATATG SSEV-[Giz] AAAGAACCTAGGGTTCGTAGTTTGTACAGGCTTGACGCTCTGAGCTAAGGCATGGATATG SSEV-[Man] AAAGAACCTAGGGTTCGTAGTTTGTACAGGCTTGACGCTCTGAGCTAAGGCATGGATATG SSEV-[Asw] AAAGAACCTAGGGTTCGTAGTTTGTACAGGCTTGACGCTCTGAGCTAAGGCATGGATATG SSV-ZA GAAGAAGCCGGAGTCAGTTGTGTAGACAGGTTTTGCACTCTGAGCGAGTACGTGGATGTG SSREV GAAGAACCCTTGGTTCGTCGTTTGTACAGGCCTGACGCTCTGGACTAAGGCATGGAGGTG PanSV-KE AAAGTACCTCTCGTCACGAGTAGTGCAAGGCTTGATGCATTGCAGGAGTGCATGGCAGTG PanSV-Kar AAAGTACCTCTCGTCACGAGTAGTGACAGGCTTGATGCACTGGAGAAGAGCATGGCAGTG DSV AAAGAACCTCTGGTTCGTGGTGTTTACCTGCTTCTCAGTTTGAACCAGTGCATGACTATG CSMV AAAGTATTTTGGAGAGGTGGTTCTGAAATTTGCTTCGAGTTGGACGAAGGCATGTAAGTG WDV-[SE] TAAGGCATTGGGATTGGTGATGGAAGCACGAAGCTTGTTCTGCACGAGAACGTGCAGATG WDV-[FR] TAAGGCATTGGGATTGGTGATGGAAGCACGAAGCTTGTTCTGCACGAGAACGTGCAGATG WDV-[CZ] AAGAGCATTGGGATTGGTGATGGAAGCACGAAGCTTGTTCTGCACGAGAACGTGCAGATG TYDV AAAAAAAGAAGGGTCACGTATATTGCTTCTTTTGTCAAGCTGTATAAGGCAGTGAAGATG BeYDV GAAAAAAGAAGGATCCCTAATACAAGGTTTTTTATCAAGCTGGATAAGAGCATGATAGTG MiSV-[JP] AAAGAACTTGGGGTTCCTTGTGCATAGTTTGGTGTTTAGCTGTATAAGGACATGGAGATG MiSV AAAGAACTTGGGGTTCCTTGTGCATAGTTTGGTGTTTAGCTGTATAAGGACATGGAGATG [ 2521 2580] RANDOM GAAGTCCACATTAGCCCGAGC----AGAAAGCATTCTGTATAGGTATGTGAGTAGTGAAG MSV-RE[N2AR3] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATATACTTGGGTATCCAACGAAC MSV-RE[N2AR4] CAAACTTCCATCTTTATGTTCCTCTCGGGCACATAGAATATACTTGGGTATCCAACGAAC MSV-RE[N2AR6] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATATACTTGGGTATCCAACGAAC MSV-RE[N2AR2] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATATACTTGGGTATCCAACGAAC MSV-RE[N2AR5] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATATACTTGGGTATCCAACGAAC MSV-RE[N2AR8] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATATACTTGGGTATCCAACGAAC MSV-RE[SP1R10] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATATACTTGGGTATCCAACGAAC MSV-RE[SP2R13] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATATACTTGGGTATCCAACGAAC MSV-RE[SP2R11] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATATAATATACTTGGGTATCCAACGAAC MSV-RE[SP2R7] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATATAATATACTTGGGTATCCAACGAAC MSV-RE[SP2R12] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATATAATATACTTGGGTATCCAACGAAC MSV-KE[SA] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATATACTTGGGAATCCAACGAAC MSV-KE[Kom] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATATATTTGGGAATCCAACGAAC MSV-KE CAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATATATTTGGGAATCCAACGAAC MSV-KE[NG] CAAACTTCCATCTTTATGTGCCTCTCGGGCACATAGAATGTATTTGGGAATCCAACGAAC SetSV TTGATTTCCATCTCTATGCGCCTCCCGGGCGCATATGATGTACAGAGGAGTCCAATGACT SSEV-[BS] CCAGGATCCATCAGCATGAGCTTCCCGGCTCACGACGATGTACGCTGGATTCCAGTGACC SSEV-[Giz] CCAGGATCCATCAGCATGAGCTTCCCTGCTCACGACGATGTACGCTGGATTCCAGTGACC SSEV-[Man] CCAGGATCCATCAGCATGAGCTTCCCTGCTCACGACGATGTACGCTGGATTCCAGTGACC SSEV-[Asw] CCAGGATCCATCAGCATGAGCTTCCCTGCTCACGACGATGTAAGCTGGATTCCAGTGACC SSV-ZA ATACCCTCCGTCTTCATGTGTCTCCCTGACAGATAGGACATACACTGGTGTCCAGTGTGC SSREV CCATTCTCCATCTGCGTGTGCTTCCCTGCTCACTAGAATGTACGCCGGACTCCAGTGACT PanSV-KE CCATGTCCCGTCTGTGTGTGTCTCCCTGACTACTAAGATGTATGCTGGCTCATATTCCCT PanSV-Kar CCATGTTCCGTCTTGGTGAGTCTCTCTCACTACCAGGATGTATGCTGGCTCAAAGTCCTT DSV CAATGATCCATCTGCATGATGCTCGGATGCAACAAGGATGTAAATGGGATTCCAAGACTT CSMV GGGCTCACCGTCAGCATGGAATTCCCTGGAAATGTAAATATAATTACATTTCTTATTTTT WDV-[SE] TGGTGATCCATCTTCGTGGAGCTCTCTAACAGCAGCGATGTAGAGGGGCTCATATTTGTT WDV-[FR] TGGTGATCCATCTTCGTGGAGCTCTCTAACAGCAGCGATGTAGAGGGGCTCATATTTGTT WDV-[CZ] TGGTGATCCATCTTCGTGGAGCTCTCTAACAGCAGCGATGTAGAGGGGCTCATATTTGTT TYDV GGGAGTACCATCCTGGTGGAGTTCAGTAGCAATAGCGATAAAGAAAATAGCAAAAC-GTG BeYDV GGTAGTGCCATCTTGATGAAGCTCAGAAGCAACACCAAGGAAGAAAATAAGAAAAG-GTG MiSV-[JP] CGGGTCCCCGTCCTTATGGAACTCTTGGGATACCTTAATGTATCCTGGAATTTTCTCGGT MiSV CGGGTCCCCGTCCTTATGGAACTCTTGGGATACCTTAATGTATCCTGGAATTTTCTCGGT [ 2581 2640] RANDOM AGTCTGGATCACCGCCAAGGTTGTTGGCGTCTTAGGCAATTGCGCCGT-TTCGTATTCGG MSV-RE[N2AR3] AACGAGCTCCCAAAT-CATCTGGCAGGCGATTTCAGGATTTTCTGGGCACTTTGGATAGG MSV-RE[N2AR4] AACGAGCTCCCAAAT-CATCTGGCAGGCGATTTCAGGATTTTCTGGGCACTTTGGATAGG MSV-RE[N2AR6] AACGAGCTCCCAAAT-CATCTGGCAGGCGATTTCAGGATTTTCTGGGCACTTTGGATAGG MSV-RE[N2AR2] AACGAGCTCCCAAAT-CATCTGGCAGGCGATTTCAGGATTTTCTGGGCACTTTGGATAGG MSV-RE[N2AR5] AACGAGCTCCCAAAT-CATCTGGCAGGCGATTTCAGGATTTTCTGGGCACTTTGGATAGG MSV-RE[N2AR8] AACGAGCTCCCAAAT-CATCTGGCAGGCGATTTCAGGATTTTCTGGGCACTTTGGATAGG MSV-RE[SP1R10] AACGAGCTCCCAAAT-CATCTGACAGGCGATTTCAGGATTTTCTGGGCACTTTGGATAGG MSV-RE[SP2R13] AACGAGCTCCCAAAT-CATCTGACAGGCGATTTCAGGATTTTCTGGGCACTTTGGATAGG MSV-RE[SP2R11] AACGAGCTCCCAAAT-CATCTGACAGGCGATTTCAGGATTTTCTGGGCACTTTGGATAGG MSV-RE[SP2R7] AACGAGCTCCCAAAT-CATCTGACAGGCGATTTCAGGATTTTCTGGGCACTTTGGATAGG MSV-RE[SP2R12] AACGAGCTCCCAAAT-CATCTGACAGGCGATTTCAGGATTTTCTGGGCACTTTGGATAGG MSV-KE[SA] GACGAGCTCCCAGAT-CATCTGACAGGCGATTTCAGGATTTTCTGGACACTTTGGATAGG MSV-KE[Kom] GACGAGCTCCCAGAT-CATCTGACAGGCGATTTCAGGATTTTCTGGACACTTTGGATAGG MSV-KE AACGAGCTCCCAGAT-CATCTGACAGGCGATTTCAGGATTTTCTGGACACTTTGGGTAGG MSV-KE[NG] AACGAGCTCCCAGAT-CATCTGACAGGCGATTTCAGGATTTTCTGGACACTTTGGATAGG SetSV ACAGAGATCCCAGAT-CCTCTGACTGATGATTTCTGGCTGTTCGGGACACTGAGGATATG SSEV-[BS] TATGAGACTCCAGAGATGG-AGCCCAACAGCTTCAGGGTCTAGATGGCACTTGGAATATG SSEV-[Giz] TATGAGACTCCAGAGATGG-AGCCCAACAGCTTCAGGTTCTAGATGGCACTTGGAATATG SSEV-[Man] TATGAGACTCCAGAGATGG-AGCCCAACAGCTTCAGGTTCTAGATGGCACTTGGAATATG SSEV-[Asw] TATGAGACTCCAGAGATGG-AGCCCTACAGCTTCAGGTTCTAGATGGCACTTCGGATATG SSV-ZA AATGAGGCTCCATATGTGT-AGACCTACAGCTTCAGGTTCTAATGGACAGCGAGAGTAGG SSREV AATGAGCTGCCATA-GTATCAGACCCACTGCCTCTGGGTCCAGTCTGCAGCGAGAGTAAG PanSV-KE AGTGAGTCTGAAGAGATG-CTCACCGATGAACTCTGGTTCTAGTGGACACTTGCTGTATG PanSV-Kar AGTGAGCCTGAAGAGATG-CTCACCGATGAACTCAGGTTCTAGTGGACACTTGCTGTATG DSV AAGGAGATCCCAGAGATGATCAGCT-ATGAGCTGAGGAGAGTGATCGCACTTGGAATAGG CSMV TAGACGGTCAGCAAT-TTTCTGACCAGCCTCTTCGGGACTGATAGGACACCTGGGATAGG WDV-[SE] CAAGAGAGTGC-GAAGTGAATCCAAGGCGTACTGTGGCTCAAGGGTACATTCAGGATATG WDV-[FR] CAAGAGAGTGC-GAAGTGAATCCAAGGCGTACTGTGGCTCAAGGGTACATTGAGGATATG WDV-[CZ] CAAGAGAGTGC-GAAGTGAATCCAAGGCGTACTGTGGCTCAAGGGTACATTGAGGATATG TYDV AAAGTTTATCCCAGAGGAAATCTCTGAGATTTTCTGCACTAGAGCTGCAGCGTGGATAAG BeYDV TGAGTTTCTCCCAGAGAAACTGGAATAAATCATCTCTTTGAGATGAGCACTTGGGGTAGG MiSV-[JP] CAGGCGAGAGA-ACAATTCCTTCATCAGCTCGGATGGTGTTAGGTTGCAGTGTGGATAGG MiSV CAGGCGAGAGA-ACAATTCCTTCATCAGCTCGGATGGTGTTAGGTTGCAGTGTGGATAGG [ 2641 2700] RANDOM CCGAGGTGGCGGCTTTAGCA-AACCATTGATGATTGCCGATA-GTGTGAAGCTCGCGATG MSV-RE[N2AR3] TAAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-RE[N2AR4] TAAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-RE[N2AR6] TAAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-RE[N2AR2] TAAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-RE[N2AR5] TAAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-RE[N2AR8] TAAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-RE[SP1R10] TAAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-RE[SP2R13] TAAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-RE[SP2R11] TAAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-RE[SP2R7] TAAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-RE[SP2R12] TAAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-KE[SA] TTAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-KE[Kom] TTAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-KE TTAGGAA--CGTGTT-----------------------------AGCGTT-CCTG---TG MSV-KE[NG] TTAGGAA--CGTGTT-----------------------------AGCGTT-CCGG---TG SetSV TCAGGAA--GGTGTT-----------------------------AGGAGA-TCTA---TG SSEV-[BS] TGAGGAA--TGTGTT-----------------------------TACGTT-CCTG---TG SSEV-[Giz] TGAGGAA--TGTGTT-----------------------------TACGTT-CCTG---TG SSEV-[Man] TGAGGAA--TGTGTT-----------------------------TACGTT-CCTG---TG SSEV-[Asw] TGAGAAA--TGTGTT-----------------------------TACGTT-CCTG---TG SSV-ZA TGAGGAA--CGTGTT-----------------------------CACGTT-GCGG---TG SSREV TGAGGAA--GGTGTT-----------------------------GGCATT-CCTA---TG PanSV-KE TGAGGAA--GGTGTT-----------------------------CGCGTT-CCGG---TG PanSV-Kar TGAGGAA--GGTGTT-----------------------------CGCGTT-CCGG---TG DSV TCAGGAA--TGTGTT-----------------------------AGCATT-CCTG---TG CSMV TGAGGAAGACATGTTTAGTCCTCAGGGAGAAGGCCTTCTCCCCAGGCGTCACTTGCCCTC WDV-[SE] TTAGAAAGAGGTACTTGGAATAGACACGGAA---CCTGGGTGCAGATGAAGAGGCCATGG WDV-[FR] TTAGAAAGAGGTACTTGGAATAGACACGGAA---CCTGGGTGCAGATGAAGAGGCCATGG WDV-[CZ] TTAGAAAGAGGTACTTGGAATAGACACGGAA---CCTGGGTGCAGATGAAGAGGCCATGG TYDV TAAGGAAGACATATTTGGTTT------GGAG---TCTGA------------AGGATTTGG BeYDV TAAGGAAAACATATTTAGATT------GGAG---TCTGA------------AGTTCTTG- MiSV-[JP] TAAGGAAGAATTGCTTGCTGTTCCAACGTGG---TGTTGG-ATGGTTTGAAGGACCAGGA MiSV TAAGGAAGAATTGCTTGCTGTTCCAACGTGG---TGTTGG-ATGGTTTGAAGGACCAGGA [ 2701 2760] RANDOM GGTAATATGTATATGTGCGGTAAGTGGTATAGTTGGAAGGGACGGCCCAAATGGGAATCG MSV-RE[N2AR3] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATATCCGACGAC------GGAGGACG MSV-RE[N2AR4] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATATCCGACGAC------GGAGGACG MSV-RE[N2AR6] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATATCCGACGAC------GGAGGACG MSV-RE[N2AR2] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATATCCGACGAC------GGAGGACG MSV-RE[N2AR5] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATATCCGACGAC------GGAGGACG MSV-RE[N2AR8] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATATCCGACGAC------GGAGGACG MSV-RE[SP1R10] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATATCCGACGAC------GGAGGACG MSV-RE[SP2R13] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATATCCGACGAC------GGAGGACG MSV-RE[SP2R11] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATATCCGACGAC------GGAGGACG MSV-RE[SP2R7] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATATCCGACGAC------GGAGGACG MSV-RE[SP2R12] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATATCCGACGAC------GGAGGACG MSV-KE[SA] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATAGCAGACGAC------GGAGGCTG MSV-KE[Kom] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATAGCCGACGAC------GGAGGTTG MSV-KE TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATAGCCGACGAC------GGAGGCTG MSV-KE[NG] TGAGAACTGACGGTTGGATGAGGAGGAGGC---CATTGCCGACGAC------GGAGGTTG SetSV TGAGAACGGACGGTTGGATGAGGAGGAGGT---CATATCCGACGAC------GGAGGCTG SSEV-[BS] CTTGAAGGAACGGCTGGCAGAGCCTGACTC---T---GTTGA---TCCTAC-GGTTGTCA SSEV-[Giz] CTTGAAGGAACGGCTGGCAGAGCCTGACTC---T---GTTGA---TCCTAC-GGTTGTCA SSEV-[Man] CTTGAAGGAACGGATGGCAGAGCCTGACTC---T---GTTGA---TCCTAC-GGTTGTCA SSEV-[Asw] CTTGAAGGAACGGACGGCAGAGCCTGAGTC---T---GTTGA---TCCTAC-GGTTGTCA SSV-ZA TTTGAAGCGACGGCTAGGAGTGGAAGACAC---A---GTTGA---TCCTAC-GGTCGACA SSREV CTTGA----ATGGCC-----TGGAGGCTAC---G---GTGGA--GTCCTCC-TGTGAAGG PanSV-KE CCTGAAGCAACGGACG-CTGTGCCTGCCCT---CAGAGG--ATGATCCTAC-GGTCGACA PanSV-Kar CCTGAAGGACCGGACG-CTGTGCCTGCCAT---CTGAGGTGATAGACAGAGAGGTCGACA DSV CCTGAATGAACGGTTTGCAGCCATTGGATG---AAGAAGGAACGG--CTA-AGGGAGGCA CSMV CGCGAGATGGCACTTGTACGGAAGTGCCACTTCCCTCCCCCTCGCTCTCACTGACAGGCA WDV-[SE] TAGTGAACAGAAGTCCGGCAGGTCCTTAGCGAAAAAACGGGGTG-TGCCAGAAAACTCTA WDV-[FR] TAGTGAACAGAAGTCCGGCAGGTCCTTAGCGAAAAAACGGGGTG-TGCCAGAAAACTCTA WDV-[CZ] TAGTGAACAGAAGTCCGGCAGGTCCTTAGCGAAAAAACGGGGTG-TGCCAGAAAACTCTA TYDV T--TTTCTGGGGGGCTGA-AGGCATATTAAGGCTCAA-GTACCG-TACGATGAAACTCTA BeYDV ---CTAGCAGAAGGC----ATGT-TGTTGTGACTCCG-AGGGGT-TGCC-TCAAACTCTA MiSV-[JP] CGGT---TGGATGCT--GCAGAT------------GATGCAG-G-TGCCCTCAT-CTCTA MiSV CGGT---TGGATGCT--GCAGAT------------GATGCAG-G-TGCCCTCAT-CTCTA [ 2761 2820] RANDOM --ACTGCCTACGGGGGGACCCTGAAAGTTCCCAGAGCCATTCAAGACTGCGATTAGGCCC MSV-RE[N2AR3] AGGCTGA----GTGATGG--CA---GAT-TGG-GAGCT-CTCA---ACTCT---ATACCA MSV-RE[N2AR4] AGGCTGA----GTGATGG--CA---GAT-TGG-GAGCT-CTCA---ACTCT---ATACCA MSV-RE[N2AR6] AGGCTGA----GTGATGG--CA---GAT-TGG-GAGCT-CTCA---ACTCT---ATACCA MSV-RE[N2AR2] AGGCTGA----GTGATGG--CA---GAT-TGG-GAGCT-CTCA---ACTCT---ATACCA MSV-RE[N2AR5] AGGCTGA----GTGATGG--CA---GAT-TGG-GAGCT-CTCA---ACTCT---ATACCA MSV-RE[N2AR8] AGGCTGA----GTGATGG--CA---GAT-TGG-GAGCT-CTCA---ACTCT---ATACCA MSV-RE[SP1R10] TGGCTAA----GTGATGG--CA---GAT-TGG-GAGCT-CTCA---ACTCT---ATAACA MSV-RE[SP2R13] TGGCTAA----GTGATGG--CA---GAT-TGG-GAGCT-CTCA---ACTCT---ATAACA MSV-RE[SP2R11] TGGCTAA----GTGATGG--CA---GAT-TGG-GAGCT-CTCA---ACTCT---ATAACA MSV-RE[SP2R7] TGGCTAA----GTGATGG--CA---GAT-TGG-GAGCT-CTCA---ACTCT---ATAACA MSV-RE[SP2R12] TGGCTAA----GTGATGG--CA---GAT-TGG-GAGCT-CTCA---ACTCT---ATAACA MSV-KE[SA] AGGCTGA----GGGATGG--CA---GAC-TGG-GAGCT-CCAA---ACTCT---ATAGTA MSV-KE[Kom] AGGCTGA----GGGATGG--CA---GAC-TGG-GAGCT-CCAA---ACTCT---ATAGTA MSV-KE AGGCTGA----GGGATGG--CA---GAA-TGG-GAGCT-CCAA---ACTCT---ATAGTA MSV-KE[NG] AGGCTGA----GGGATGG--CA---GAC-TGG-GAGCT-CCAA---ACTCT---ATAGTA SetSV CCGCT-A----GCGAAGG--CA---GGGATGG-GAGCT-CTAACAAACTCTCCTACAGCT SSEV-[BS] TGGCTGG----GCGAGAGGTCT---GATTCTG-AG----TCT-CAACTAACTCTCCTACA SSEV-[Giz] TGGCTGG----GCGAGAGGTCT---GATTCTG-AG----TCT-CAACTAACTCTCCTACA SSEV-[Man] TGGCTGG----GCGAGAGGTCT---GATTCTG-AG----TCT-CAACTAACTCTCCAACA SSEV-[Asw] TGGCTGG----GCGAGAGGTCT---GATTCTG-AG----TCT-CAACTAACTCTCCTACA SSV-ZA TCTCTTT----GGGCAGTGTCT---GATTTGG-AG----CCT-CAACCAAC-CTCCTACA SSREV C------------ATGGAGTCT---GATTTGG-GAGCT-CTC-CAACTCTA-CTACAACA PanSV-KE T-AGCGC----AG-AGGCTGGC---AGATCTC-AGACT--CT-CAACT-CTCTACCACTA PanSV-Kar TTAGCGC----AGGAGGTTGGG---CAATCTC-AGGCT--CT-CCTCAGCTCTATCCCTA DSV CGGC-----------------A---GATTTGG-GAGCT-CTT-CAACAAACTCTA-GACA CSMV GGGACGACATAATAAAAGACGACGTGGCTTGATGGACA-GCCGTAGGATGTGTTCTGAGA WDV-[SE] TCCTCTACCCTGCGTGGAGGTGTG-AATTCTGCACACT-GCAAATGCAATGTGTCCAATG WDV-[FR] TGCTCTACCCTGCGTGGAGGTGTG-AATTCTGCACACT-GGAAATGCAATGTGTCCAATG WDV-[CZ] TGCTCTACCCTGCGTGGAGGTGTG-AATTCTGCACACT-GCTAATGCAATGTGTCCAATG TYDV TTCT-TAACTAGTGAGTGAGCCAG-TGA-----------GCCAGGTTTATGTG----GCA BeYDV TCTTATAACCGGCGTGGAGGCATG-GAG-----------GCAAGGGCATTTTG----GTA MiSV-[JP] ----CTACTCTATG----GGTGTG--GCTCCG-ATGCT-CTCAGAA-AACTTGC----TA MiSV ----CTACTCTATG----GGTGTG--GCTCCG-ATGCT-CTCAGAA-AACTTGC----TA [ 2821 2880] RANDOM GCGCTTCCATTACTGGTTGCAGCCTCAGGGCACAGCTCTAGAAACTCGTAAAGAGGA-AT MSV-RE[N2AR3] -ACCGG-----------TGCGCCTTCGAAATCCGCCGCTCC-TTGTTTTATAGTGGTTGT MSV-RE[N2AR4] -ACCGG-----------TGCGCCTTCGAAATCCGCCGCTCC-TTGTTTTATAGTGGTTGT MSV-RE[N2AR6] -ACCGG-----------TGCGCCTTCGAAATCCGCCGCTCC-TTGTTTTATAGTGGTTGT MSV-RE[N2AR2] -ACCGG-----------TGCGCCTTCGAAATCCGCCGTTCC-TTGTTT