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Roger Beachy's Laboratory









Journals

   JOURNAL ARTICLES: 1997 to 2002
  144. Kahn, T.W., R.N. Beachy, and M.M. Falk.  1997.  Cell-free expression of a GFP fusion protein allows quantitation in vitro and in vivoCurr Biol 7:R207-R208.  
  145. Beachy, R.N. 1997. The 2',5'A antiviral system in plants: A dose of mammalian medicine. Nat Biotechnol 14:1538-39.  
  146. Arce-Johnson, P., U. Reimann-Philipp, H.S. Padgett, R. Ravera-Bustamante, and R.N. Beachy. 1997. Requirement of the movement protein for long distance spread of tobacco mosaic virus in grafted plants. Mol Plant Microbe Interact 10:691-699.  
  147. Marcos, J.F. and R.N. Beachy. 1997. Transgenic accumulation of two plant virus proteins on a single self-processing polypeptide. J Gen Virol 78:1771-1778.
  148. Aleman-Verdaguer, M.-E., Goudou-Urbino, C., Dubern, J., Beachy, R.N., Fauquet, C.M. 1997. Analysis of the sequence diversity of the P1, HC, P3, Nib and CP genomic regions of several yam mosaic potyvirus isolates: Implications for the intraspecies molecular diversity of potyviruses. J Gen Virol 78:1253-1264.
  149. Padgett, H.S., Y. Watanabe, and R.N. Beachy. 1997. Identification of the tobamovirus protein that activates the N gene-mediated hypersensitive response. Mol Plant Microbe Interact 10:709-715.  
  150. Yin, Y., Q. Zhu, S. Dai, C. Lamb, and R.N. Beachy. 1997. RF2a, a bZIP transcriptional activator of the phloem-specific rice tungro bacilliform virus promoter, functions in vascular development. EMBO J 16:5247-5259.
  151. Yin, Y., L. Chen, and R.N. Beachy. 1997. Promoter elements required for phloem-specific gene expression from the RTBV promoter in rice. Plant J 12:1179-1188.  
  152. Bendahmane, M., J.H. Fitchen, G. Zhang, and R.N. Beachy. 1997. Studies of coat protein mediated resistance to tobacco mosaic tobamovirus: Correlation between  assembly of mutant coat proteins and resistance. J Virol 71:7942-7950.
  153. Ceriani, M.F., J.F. Marcos, H.E. Hopp, and R.N. Beachy. 1997. Simultaneous accumulation of multiple viral coat proteins from a TEV-NIa based expression vector. Plant Mol Biol 36:239-248  
  154. Oparka, K.J., D.A.M. Prior, S. Santa Cruz, H.S. Padgett, and R.N. Beachy. 1997. Gating of epidermal plasmodesmata is restricted to the leading edge of expanding infection sites of tobacco mosaic virus. Plant J 12:781-789.  
  155. Ares, X., G. Calamante, S. Cabral, P. Hemenway, R.N. Beachy and A. Mentaberry. 1998. Transgenic plants expressing PVX ORF2 protein (p24) are resistant to TMV and Ob tobamoviruses. J Virol 72:24-31.
  156. Kahn, T.W., M. Lapidot, M. Heinlein, C. Reichel, B. Cooper, R. Gafny, and R.N. Beachy. 1998. Domains of the TMV movement protein involved in subcellular localization. Plant J 15(1):15-25.  
  157. Heinlein, M., M. Wood, T. Thiel, and R.N. Beachy. 1998. Targeting and modification of prokaryotic cell-cell junctions by tobacco mosaic virus cell-to-cell movement protein. Plant J 14(3): 345-351.  
  158. Heinlein, M., H.S. Padgett, S. Gens, B. Pickard, S.J. Casper, B.L. Epel, and R.N. Beachy. 1998. Changing patterns of localization of TMV movement protein and replicase to endoplasmic reticulum and microtubules during infection. Plant Cell 10:1107-1120.

  159. Lewis, J.K., M. Bendahamane, T.J. Smith, R.N. Beachy, and G. Siuzdak. 1998. Identification of viral mutants by mass spectrometry. Proc Natl Acad Sci USA 95:8596-8601.
  160. Opalka, N., Brugidou, C., Bonneau, C., Nicole, M., Beachy, R. N., Yeager, M., & Fauquet, C. M. 1998. Movement of rice yellow mottle virus between xylem cells through pit membranes. Proc Natl Acad of Sci USA 95: 3323-3328.
  161. Verdaguer, B., de Kochko, A., Fux, C., Beachy, R. N., & Fauquet, C. M. 1998. Functional organization of the cassava vein mosaic virus (CsVMV) promoter. Plant Mol Biol 37:1055-1067.  
  162. Bonneau, C., C. Brugidou, L. Chen, .N. Beachy, C. Fauquet. 1998. Expression of the rice yellow mottle virus P1 protein in vitro and in vivo and its involvement in virus spread. Virology 244:79-86.  
  163. Chen, L., S. Zhang, R.N. Beachy, C.M. Fauquet. 1998. Establishing a protocol for consistent large-scale production of transgenic rice plants. Plant Cell Rep 18:25-31.  
  164. De Kochko, A., B. Verdaguer, N. Taylor, R. Carcamo, R.N. Beachy, and C.M. Fauquet. 1998. Cassava vein mosaic virus (CsVMV), type species for a new genus of plant double stranded DNA viruses? Arch Virol 143:945-962.  
  165. Franck-Duchenne, M., R.N. Beachy, and C.M. Fauquet. 1998. In vitro stem elongation of sweet pepper in media containing 24-epi brassinolide. Plant Cell Tissue Organ Cult 53:79-84.   
  166. Gonzalez, A.E., C. Schopke, N.J. Taylor, R.N. Beachy, and C.M. Fauquet. 1998. Regeneration of transgenic cassava plants (Manihot esculenta Crantz) through Agrobacterium-mediated transformation of embryogenic suspension cultures. Plant Cell Rep 17:827-831.  
  167. Reichel, C., and R.N. Beachy. 1998. Tobacco mosaic virus infection induces severe morphological changes of the endoplasmic reticulum. Proc Natl Acad Sci USA 95:11169-11174

  168. Chen, L., P. Marmey, N. Taylor, J.P. Brizard, C. Espinoza, P. D'Cruz, H. Huet, S. Zhang, A. deKochko, R.N. Beachy, and C.M. Fauquet. 1998. Expression to inheritance of multiple transgenes in rice plants. Nat Biotechnol 16:1060-1064.  
  169. Umaharan, P., M. Padidam, R.H. Phelps, R.N. Beachy and C.M. Fauquet. 1998. Distribution and diversity of geminiviruses in Trinidad and Tobago. Phytopathology 88(12):1262-1268.  
  170. Karrer, E.E., R.N. Beachy and C.A. Holt. 1998. Cloning of tobacco genes that elicit the hypersensitive response. Plant Mol Biol 36:681-690.  
  171. Ceriani, M.F., J.F. Marcos, H.E. Hopp, R.N. Beachy. 1998. Simultaneous accumulation of multiple viral coat proteins from a TEV-Nia based expression vector. Plant Mol Biol 36:239-248.  
  172. Mas, P. and R.N. Beachy. 1998. Distribution of TMV movement protein in single living protoplasts immobilized in agarose. Plant J 15(6):835-842.  
  173. Zhang, S., W-Y Song, L. Chen, D. Ruan, N. Taylor, P. Ronald, R.N. Beachy and C.M. Fauquet. 1998.  Transgenic elite Indica rice varieties resistant to xanthomonas oryzae pv. oryzae molecular breeding.  Mol Breed 4:551-558.   
  174. Marmey, P., B. Bothner, E. Jacquot, A. deKochko, P. Yot, G. Siuzdak, R.N. Beachy, C. M. Fauquet, 1999. Rice tungro bacilliform virus open reading frame 3 encodes a single 37Kda coat protein. Virology 253:319-326.  
  175. Beachy, R.N. 1999. Coat-protein-mediated resistance to tobacco mosaic virus: Discovery mechanisms and exploitation. Phil Trans R Soc Lond B 354:659-664.  
  176. Szécsi, J., X.S. Ding, C.O. Lim, M. Bendahame, M.J. Cho, R.S. Nelson, R.N. Beachy. 1999. Development of TMV Infection Sites in Nicotiana benthamiana. Mol Plant Microbe Interact 12:143-152.  
  177. Padidam, M., V.S. Reddy, R.N. Beachy and C. M. Fauquet. 1999. Molecular characterization of a plant mitochondrial chaperone GrpE. Plant Mol Biol 39:871-881.  
  178. Padidam, M., R.N. Beachy and C. M. Fauquet. 1999. A phage single-stranded DNA (ssDNA) binding protein complements ssDNA accumulation of a geminivirus and interferes with viral movement. J Virol 73(2):1609-1616.
  179. Lazarowitz, S.G. and R. N. Beachy. 1999. Viral movement proteins as probes for intracellular and intercellular trafficking plants. Plant Cell 11:535-548.  
  180. Bendahmane, M. and R.N. Beachy.  1999.  Control of tobamovirus infections via pathogen-derived resistance.  Adv Virus Res 53:369-386.   
  181. Bendahmane, M., M. Koo, E. Karrer and R. N. Beachy. 1999. Display of epitopes on the surface of tobacco mosaic virus: Impact of change and isoelectric point of the epitope on virus-host interaction. J Mol Biol 290:9-20.  
  182. Koo, M., M. Bendahmane, G. A. Lettieri, A. D. Paoletti, T.E. Lane, J.H. Fitchen, M.J. Buchmeier, R.N. Beachy. 1999. Protective immunity against murine hepatitis virus (MHV) induced by intranasal or subcutaneous administration of hybrids of tobacco mosaic virus that carries an MHV epitope. Proc Natl Acad Sci USA (96)7774-7779.
  183. Pickard, B.G., R.N. Beachy. 1999. Intercellular connections are developmentally controlled to help move molecules through the plant. Cell (98)5-8.  
  184. Kawakami, S., H.S. Padgett, D. Hosokawa, Y. Okada, R. N. Beachy, Y. Watanabe. 1999. Phosphorylation and/or presence of serine 37 in the movement protein of tomato mosaic tobamovirus is essential for intracellular localization and stability in vivo. J Virol 73(8):6831-6840.
  185. Reichel, C., P. Mas, and R.N. Beachy. 1999. The role of the ER and cytoskeleton in viral trafficking.  Trends Plant Sci 4:458-462.   
  186. Chatterji, A., M. Padidam, R. N. Beachy and C.M. Fauquet. 1999. Identification of replication specificity determinants in two strains of tomato leaf curl virus from New Delhi. J Virol 73(7):5481-5489.
  187. Más, P. and R. N. Beachy. 1999. Replication of tobacco mosaic virus on endoplasmic reticulum and role of the cytoskeleton and virus movement protein in intracellular distribution of viral RNA. J Cell Biol 145(5):945-958.
  188. Staczek, J., M. Bendahmane, L. B. Gilleland, R. N. Beachy, and H. E. Gilleland Jr.  2000. Immunization with a chimeric tobacco mosaic virus containing an epitope of outer membrane protein F of Pseudomonas aeruginosa provides protection against challenge with P. aeruginosa. Vaccine 18:2266-2274  
  189. Gilleland, Jr., H.E., L. B. Gilleland, J. Staczek, B. Harty, A. Garcia-Sastre, P. Palese, F. R. Brennan, W.D.O. Hamilton, M. Bendahmane, R .N. Beachy.  2000.  Chimeric animal and plant viruses expressing epitopes of outer membrane protein F as a combined vaccine against Pseudomonas aeruginosa lung infection.  FEMS Immunol Med Microbiol 27:291-297.  
  190. Brill, L.M., R.S. Nunn, T.W. Kahn, M. Yeager, and R.N. Beachy. 2000. Recombinant tobacco mosaic virus movement protein is an RNA-binding, a'-helical membrane protein. Proc Natl Acad Sci USA (97):7112-7117.
  191. Reichel, C. and R.N. Beachy. 2000.  Degradation of tobacco mosaic virus movement protein by the 26S proteasome.  J Virol 74:3330-3337.   
  192. Más, P. and R. N. Beachy.  2000.  Role of microtubules in the intracellular distribution of tobacco mosaic virus movement protein.  Proc Natl Acad Sci USA 97:12345-12349.    
  193. Fondong, V.N., J.S. Pita, M.E.C. Rey, A. deKochko, and R.N. Beachy. 2000. Evidence of synergism between African cassava mosaic virus and a new double-recombinant geminivirus infecting cassava in Cameroon. J Gen Virol 81:287-297.
  194. Opalka, N., M. Tihova, C. Brugidou, A. Kumar, R. N. Beachy, C.M. Fauquet, and M. Yeager.  2000.  Structure of native and expanded sobemoviruses by electron cryo-microscopy and image reconstruction.  J Mol Biol 303:197-211.    
  195. Beachy, R. N. and M. Heinlein.  2000.  Role of P30 in replication and spread of TMV.  Traffic 1:540-544.                 
  196. Qu, C., L. Liljas, N. Opalka, C. Brugidou, M. Yeager, R. N. Beachy, C. M. Fauquet, J.E. Johnson, and T. Lin.  2000. 3D domain swapping of a molecular switch for quasi-equivalent symmetry modulates the stability of an icosahedral virus.  Structure 8:1095-1103.    
  197. Dai, S., P. Zheng , P. Marmey , S. Zhang, W. Tian, S. Chen , R. N. Beachy, and C. M. Fauquet. 2001.  Comparative analysis of transgenic rice plants obtained by Agrobacterium-mediated transformation and particle bombardment.  Mol Breed 7:25-33.   
  198. Petruccelli, S., S. Dai, R. Carcamo, Y. Yin, S. Chen, and R. N. Beachy.  2001.  Transcription factor RF2a alters expression of the rice tungro bacilliform virus promoter in transgenic tobacco plants.  Proc Natl Acad Sci USA 98:7635-7640.    
  199. Kotlizky, G., A. Katz, J. van der Laak, V. Boyko, M. Lapidot, R.N. Beachy, M. Heinlein, and B. Epel.  2001.  A dysfunctional movement protein of tobacco mosaic virus interferes with targeting of wild-type movement protein to microtubules. Mol Plant Microbe Interact 14(7):895-904.   
  200. Dai, S., R. Carcamo, Z. Zhang, S. Chen, and R. N. Beachy.  2001.  Bacterial cytosine deaminase gene used as a conditional negative selection marker in transgenic rice plants.  Plant Cell Rep 20:738-743.   
  201. Bendahmane, M., J. Szecsi, I. Chen, R.H. Berg, R.N.Beachy. 2002. Characterization of mutant tobacco mosaic virus coat protein that interferes with virus cell-to-cell movement.  Proc Natl Acad Sci USA 99:3645-3650.  
  202. Zhu, Q., M. Ordiz, T. Dabi. R.N. Beachy, C. Lamb.  2002. Rice TATA binding protein interacts functionally with transcription factor IIB and the RF2a bZIP transcriptional activator in an enhanced plant in vitro transcription system.  Plant Cell 14: 795-803.  
 

203.

Ordiz, M.I., C.F. Barbas III, and R. N.  Beachy.  2002.  Regulation of transgene expression in plants with polydactyl zinc finger transcription factors. Proc Natl Acad Sci

U S A 99:13290-13295. 

 
 

204.

Beachy, R.N. and M.I. Ordiz. 2002. The fingers of gene regulation in plants.  ISB News Report:December 2002:5-6.

 
 

205.

 Stege, J.T., X. Guan, T. Ho, R.N. Beachy, and C.F. Barbas III.  2002.  Controlling gene expression in plants using synthetic zinc finger transcription factors.  Plant J 32:1077-1086.

 
 

206.

Brugidou, C. N. Opalka, M. Yeager, R.N. Beachy, and C.M. Fauquet. 2002. Stability of Rice Yellow Mottle Virus and cellular compartmentalization during the infection process in Oryza sativa (L.). Virology 297:98-108.

 


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