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Brad Barbazuk's Laboratory

	W. Brad Barbazuk, Scott J. Emrich, Hsin D. Chen, Li Li, and Patrick S. Schnable. SNP discovery in maize via 454 transcriptome sequencing. 2007 The Plant Journal (In Press). *authors contributed equally
	Scott J. Emrich, W. Brad Barbazuk, Li Li and Patrick S. Schnable. Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Research 2007 Jan;17(1):69-73. Epub 2006 Nov 9. *authors contributed equally
	B.S. Goldman, W.C. Nierman, D. Kaiser, S. Slater, A.S. Durkin, J. Eisen, C. M. Ronning, W.B. Barbazuk, M. Blanchard, C. Field, C. Halling, G. Hinkle, O. Iartchuk, H.S. Kim, C. Mackenzie, R. Madupu, N. Miller, A. Shvartsbeyn, S. Sullivan, M. Vaudin, R. Weigand, & H.B. Kaplan. Evolution of sensory complexity recorded in a myxobacterial genome. PNAS 2006 103(41):15200-5. Epub 2006 Oct 2
	Rémy Bruggmann, Arvind K. Bharti, Heidrun Gundlach, Jinsheng Lai, Ana C. Pontaroli, Georg Haberer, Galina Fuks, Charles Du, Fusheng Wei, Sarah Young, Christina Raymond, Matt C. Estep, Renyi Liu, Jeffrey L. Bennetzen, Agnes P. Chan, Pablo D. Rabinowicz, John Quackenbush, W. Brad Barbazuk, Rod A. Wing, Steve Rounsley, Bruce Birren, Chad Nusbaum, Klaus F.X. Mayer, and Joachim Messing. Uneven Chromosome Contraction and Expansion in the Maize Genome. Genome Research. 2006 Oct;16(10):1241-51. Epub 2006 Aug 10
	L.-P. Hamel, M.-C. Nicole, S. Sritubtim, M.-J. Morency, M. Ellis, J. Ehlting, N. Beaudoin, B. Barbazuk, D. Klessige, J. Lee, G. Martin, J. Mundy, Y. Ohashi, D. Scheel, J. Sheen, T. Xing, S. Zhang, A. Seguin and B. E. Ellis. Ancient signals: Comparative genomics of plant MAPK and MAPKK gene families Trends in Plant Science 2006; 11(4): 192-8.
	Chan AP, Pertea G, Cheung F, Lee D, Zheng L, Whitelaw C, Pontaroli AC, SanMiguel P, Yuan Y, Bennetzen J, Barbazuk WB, Quackenbush J, Rabinowicz PD. The TIGR Maize Database. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D771-6.
	Wendl MC, Barbazuk WB. Extension of Lander-Waterman theory for sequencing filtered DNA libraries. BMC Bioinformatics. 2005 Oct 10;6:245.
	Sorghum Genomics Planning Workshop Participants. Toward sequencing the sorghum genome: a US National Science Foundation-sponsored workshop report. Plant Physiology 2005 138: 1898-1902.
	Barbazuk WB, Bedell JA, Rabinowicz PD. Reduced representation sequencing: a success in maize and a promise for other plant genomes. Bioessays. 2005 Aug;27(8):839-48.
	Clifton SW, Minx P, Fauron CM, Gibson M, Allen JO, Sun H, Thompson M, Barbazuk WB, Kanuganti S, Tayloe C, Meyer L, Wilson RK, Newton KJ. Sequence and comparative analysis of the maize NB mitochondrial genome. Plant Physiol. 2004 Nov;136(3):3486-503.
	Springer NM, Xu X, Barbazuk WB. Utility of different gene enrichment approaches toward identifying and sequencing the maize gene space. Plant Physiol. 2004 Oct;136(2):3023-33
	Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, Lee Y, Zheng L, van Heeringen S, Karamycheva S, Bennetzen JL, SanMiguel P, Lakey N, Bedell J, Yuan Y, Budiman MA, Resnick A, Van Aken S, Utterback T, Riedmuller S, Williams M, Feldblyum T, Schubert K, Beachy R, Fraser CM, Quackenbush J. Enrichment of gene-coding sequences in maize by genome filtration. Science. 2003 Dec 19;302(5653):2118-20.
	Chen M, Presting G, Barbazuk WB, Goicoechea JL, Blackmon B, Fang G, Kim H, Frisch D, Yu Y, Sun S, Higingbottom S, Phimphilai J, Phimphilai D, Thurmond S, Gaudette B, Li P, Liu J, Hatfield J, Main D, Farrar K, Henderson C, Barnett L, Costa R, Williams B, Walser S, Atkins M, Hall C, Budiman MA, Tomkins JP, Luo M, Bancroft I, Salse J, Regad F, Mohapatra T, Singh NK, Tyagi AK, Soderlund C, Dean RA, Wing RA. An integrated physical and genetic map of the rice genome. Plant Cell. 2002 Mar;14(3):537-45.
	Hukriede N, Fisher D, Epstein J, Joly L, Tellis P, Zhou Y, Barbazuk B, Cox K, Fenton-Noriega L, Hersey C, Miles J, Sheng X, Song A, Waterman R, Johnson SL, Dawid IB, Chevrette M, Zon LI, McPherson J, Ekker M. The LN54 Radiation Hybrid Map of Zebrafish Expressed Sequences. Genome Research 2001; 11(12):2127-2132.
	McPherson JD, Marra M, Hillier L, Waterston RH, Chinwalla A, Wallis J, Sekhon M, Wylie K, Mardis ER, Wilson RK, Fulton R, Kucaba TA, Wagner-McPherson C, Barbazuk WB, Gregory SG, Humphray SJ, French L, Evans RS, Bethel G, Whittaker A, Holden JL, McCann OT, Dunham A, Soderlund C, Scott CE, Bentley DR, Schuler G, Chen HC, Jang W, Green ED, Idol JR, Maduro VV, Montgomery KT, Lee E, Miller A, Emerling S, Kucherlapati, Gibbs R, Scherer S, Gorrell JH, Sodergren E, Clerc-Blankenburg K, Tabor P, Naylor S, Garcia D, de Jong PJ, Catanese JJ, Nowak N, Osoegawa K, Qin S, Rowen L, Madan A, Dors M, Hood L, Trask B, Friedman C, Massa H, Cheung VG, Kirsch IR, Reid T, Yonescu R, Weissenbach J, Bruls T, Heilig R, Branscomb E, Olsen A, Doggett N, Cheng JF, Hawkins T, Myers RM, Shang J, Ramirez L, Schmutz J, Velasquez O, Dixon K, Stone NE, Cox DR, Haussler D, Kent WJ, Furey T, Rogic S, Kennedy S, Jones S, Rosenthal A, Wen G, Schilhabel M, Gloeckner G, Nyakatura G, Siebert R, Schlegelberger B, Korenberg J, Chen XN, Fujiyama A, Hattori M, Toyoda A, Yada T, Park HS, Sakaki Y, Shimizu N, Asakawa S, Kawasaki K, Sasaki T, Shintani A, Shimizu A, Shibuya K, Kudoh J, Minoshima S, Ramser J, Seranski P, Hoff C, Poustka A, Reinhardt R, Lehrach H; International Human Genome Mapping Consortium. A physical map of the human genome. Nature. 2001 Feb 15;409(6822):934-41.
	THE GENOME INTERNATIONAL SEQUENCING CONSORTIUM. Initial sequencing and analysis of the human genome. Nature 2001; 409: 860-921.
	Barbazuk WB, Korf I, Kadavi C, Heyen J, Tate S, Wun E, Bedell JA, McPherson JD, Johnson SL. The syntenic relationship of the zebrafish and human genomes. Genome Res. 2000 Sep;10(9):1351-8.
	Hukriede NA, Joly L, Tsang M, Miles J, Tellis P, Epstein JA, Barbazuk WB, Li FN, Paw B, Postlethwait JH, Hudson TJ, Zon LI, McPherson JD, Chevrette M, Dawid IB, Johnson SL, Ekker M. Radiation hybrid mapping of the zebrafish genome. Proc Natl Acad Sci U S A. 1999 Aug 17;96(17):9745-50.
	Vatcher GP, Barbazuk WB, O'Neil NJ, Marra MA, Ha T, Baillie DL. Identification and characterization of a serine hydroxymethyltransferase isoform in Caenorhabditis briggsae. Gene. 1999 Apr 16;230(2):137-44.
	The Sanger Center and the Washington University Genome Sequencing Center. Toward a Complete Human Genome Sequence. Genome Research 1998; 8:1097-1108.
	Barbazuk, W. B. Genetic characterization of the Caenorhabditis elegans rol-3(V) and srl-2(III) genes, and their molecular localization through correlation of the genetic and physical maps. Ph.D. Dissertation 1997.
	Barbazuk WB, Johnsen RC, Baillie DL. The generation and genetic analysis of suppressors of lethal mutations in the Caenorhabditis elegans rol-3(V) gene. Genetics. 1994 Jan;136(1):129-43.
	Book Chapters: W. Brad Barbazuk, An-Ping Hsia, Hsin D. Chen, Yan Fu, Kazuhiro Ohtsu and Patrick S. Schnable. 2006 High Throughput Molecular Genetic Maps and SNP discovery in maize. In ³Genetic Variation: A Laboratory Manual², CSHL press. (In Press).
	Hamberger B, Ehlting J, Barbazuk B, and Douglas CJ. 2006. Comparative genomics of the shikimate pathway in Arabidopsis, Populus trichocarpa and Oryza sativa: shikimate pathway gene family structure and identification of candidates for missing links in phenylalanine biosynthesis. In ³Recent Advances in Phytochemistry. Volume 40. Integrative Plant Biochemistry² (J. T. Romeo, ed), Elsevier Ltd, Amsterdam.


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